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5M1E

Crystal structure of N-terminally tagged UbiD from E. coli reconstituted with prFMN cofactor

Functional Information from GO Data
ChainGOidnamespacecontents
A0005886cellular_componentplasma membrane
A0006744biological_processubiquinone biosynthetic process
A0008694molecular_function3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
A0016831molecular_functioncarboxy-lyase activity
A0046872molecular_functionmetal ion binding
B0005886cellular_componentplasma membrane
B0006744biological_processubiquinone biosynthetic process
B0008694molecular_function3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
B0016831molecular_functioncarboxy-lyase activity
B0046872molecular_functionmetal ion binding
C0005886cellular_componentplasma membrane
C0006744biological_processubiquinone biosynthetic process
C0008694molecular_function3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
C0016831molecular_functioncarboxy-lyase activity
C0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue MN A 501
ChainResidue
AASN175
AGLU241
A7D9502
ANA503
AHOH601
AHOH607

site_idAC2
Number of Residues16
Detailsbinding site for residue 7D9 A 502
ChainResidue
ATYR179
AARG180
AARG192
ALEU194
AARG197
AGLY198
AALA231
AVAL232
AGLU241
AMN501
ANA503
AHOH601
AHOH602
ATHR160
AASN175
AILE178

site_idAC3
Number of Residues7
Detailsbinding site for residue NA A 503
ChainResidue
AASN175
ALEU176
AALA231
AGLU241
AMN501
A7D9502
AHOH602

site_idAC4
Number of Residues6
Detailsbinding site for residue MN B 501
ChainResidue
BASN175
BGLU241
B7D9502
BNA503
BHOH604
BHOH615

site_idAC5
Number of Residues18
Detailsbinding site for residue 7D9 B 502
ChainResidue
BTHR160
BASN175
BLEU176
BILE178
BTYR179
BARG180
BARG192
BLEU194
BARG197
BGLY198
BALA231
BVAL232
BGLU241
BASP290
BMN501
BNA503
BHOH604
BHOH623

site_idAC6
Number of Residues6
Detailsbinding site for residue NA B 503
ChainResidue
BLEU176
BALA231
BGLU241
BMN501
B7D9502
BHOH623

site_idAC7
Number of Residues4
Detailsbinding site for residue MN C 501
ChainResidue
CASN175
CGLU241
C7D9502
CNA503

site_idAC8
Number of Residues17
Detailsbinding site for residue 7D9 C 502
ChainResidue
CTHR160
CASN175
CLEU176
CGLY177
CILE178
CTYR179
CARG180
CARG192
CLEU194
CARG197
CGLY198
CALA231
CVAL232
CGLU241
CASP290
CMN501
CNA503

site_idAC9
Number of Residues5
Detailsbinding site for residue NA C 503
ChainResidue
CLEU176
CALA231
CGLU241
CMN501
C7D9502

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues3
DetailsACT_SITE: Proton donor => ECO:0000255|HAMAP-Rule:MF_01636
ChainResidueDetails
AASP290
BASP290
CASP290

site_idSWS_FT_FI2
Number of Residues15
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01636
ChainResidueDetails
AASN175
BGLU241
CASN175
CILE178
CARG192
CARG197
CGLU241
AILE178
AARG192
AARG197
AGLU241
BASN175
BILE178
BARG192
BARG197

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PDB entries from 2024-07-10

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