5M1D

Crystal structure of N-terminally tagged UbiD from E. coli reconstituted with prFMN cofactor

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, B, C	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	polymer	517	57836.8	3	UniProt (P0AAB5) Pfam (PF20695) Pfam (PF01977) Pfam (PF20696) UniProt (by SIFTS) (P0AAB4) In PDB	Escherichia coli	Polyprenyl p-hydroxybenzoate decarboxylase
2	A, B, C	MANGANESE (II) ION	non-polymer		54.9	3	Chemie (MN)
3	A, B, C	1-deoxy-5-O-phosphono-1-(3,3,4,5-tetramethyl-9,11-dioxo-2,3,8,9,10,11-hexahydro-7H-quinolino[1,8-fg]pteridin-12-ium-7-y l)-D-ribitol	non-polymer		525.5	3	Chemie (4LU)
4	A, B, C	SODIUM ION	non-polymer		23.0	3	Chemie (NA)
5	B	SULFATE ION	non-polymer		96.1	1	Chemie (SO4)
6		water	water		18.0	135	Chemie (HOH)

Sequence modifications

A, B, C: 1 - 497 (UniProt: P0AAB5)

PDB	External Database	Details
Met -19	-	initiating methionine
Gly -18	-	expression tag
Ser -17	-	expression tag
Ser -16	-	expression tag
His -15	-	expression tag
His -14	-	expression tag
His -13	-	expression tag
His -12	-	expression tag
His -11	-	expression tag
His -10	-	expression tag
Ser -9	-	expression tag
Ser -8	-	expression tag
Gly -7	-	expression tag
Leu -6	-	expression tag
Val -5	-	expression tag
Pro -4	-	expression tag
Arg -3	-	expression tag
Gly -2	-	expression tag
Ser -1	-	expression tag
His 0	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	3
	Total formula weight	173510.5
Non-Polymers*	Number of molecules	10
	Total formula weight	1906.3
All*	Total formula weight	175416.8

*Water molecules are not included.