5LGD
The CIDRa domain from MCvar1 PfEMP1 bound to CD36
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Platelet glycoprotein 4 | polymer | 472 | 53104.1 | 1 | UniProt (P16671) Pfam (PF01130) | Homo sapiens (Human) | Fatty acid translocase,FAT,Glycoprotein IIIb,GPIIIB,Leukocyte differentiation antigen CD36,PAS IV,PAS-4,Platelet collagen receptor,Platelet glycoprotein IV,GPIV,Thrombospondin receptor |
| 2 | B (B) | PfEMP1 variant 1 of strain MC | polymer | 179 | 20916.0 | 1 | UniProt (Q25733) Pfam (PF03011) | Plasmodium falciparum (malaria parasite P. falciparum) | |
| 3 | C (C) | alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G62182OO) | |||
| 4 | D, E, F, G, H... (A) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 8 | Chemie (NAG) | |||
| 5 | L, M (A) | PALMITIC ACID | non-polymer | 256.4 | 2 | Chemie (PLM) | |||
| 6 | N, O, P, Q, S (A, B) | GLYCEROL | non-polymer | 92.1 | 5 | Chemie (GOL) | |||
| 7 | R, T (A, B) | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | non-polymer | 122.1 | 2 | Chemie (TRS) | |||
| 8 | U, V (A, B) | water | water | 18.0 | 152 | Chemie (HOH) |
Sequence modifications
B: 576 - 754 (UniProt: Q25733)
| PDB | External Database | Details |
|---|---|---|
| Ser 626 | Cys 626 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 74020.0 | |
| Branched | Number of molecules | 1 |
| Total formula weight | 586.5 | |
| Non-Polymers* | Number of molecules | 17 |
| Total formula weight | 2987.3 | |
| All* | Total formula weight | 77593.8 |
