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5KCO

SETDB1 in complex with an early stage, low affinity fragment candidate modelled at reduced occupancy

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Histone-lysine N-methyltransferase SETDB1polymer22526337.31UniProt (Q15047)
Pfam (PF18300)
Pfam (PF18359)
Pfam (PF18358)
Homo sapiens (Human)ERG-associated protein with SET domain,ESET,Histone H3-K9 methyltransferase 4,H3-K9-HMTase 4,Lysine N-methyltransferase 1E,SET domain bifurcated 1
2B, C
(A)
SULFATE IONnon-polymer96.12Chemie (SO4)
3D
(A)
~{N}-(4-chlorophenyl)methanesulfonamidenon-polymer205.71Chemie (6RO)
4AA, BA, CA, DA, E...
(A)
UNKNOWN ATOM OR IONnon-polymer96.147Chemie (UNX)
5AB, BB, ZA
(A)
DIMETHYL SULFOXIDEnon-polymer78.13Chemie (DMS)
6CB
(A)
waterwater18.0143Chemie (HOH)
Sequence modifications
A: 196 - 403 (UniProt: Q15047)
PDBExternal DatabaseDetails
Met 179-initiating methionine
His 180-expression tag
His 181-expression tag
His 182-expression tag
His 183-expression tag
His 184-expression tag
His 185-expression tag
Ser 186-expression tag
Ser 187-expression tag
Gly 188-expression tag
Arg 189-expression tag
Glu 190-expression tag
Asn 191-expression tag
Leu 192-expression tag
Tyr 193-expression tag
Phe 194-expression tag
Gln 195-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight26337.3
Non-Polymers*Number of molecules53
Total formula weight5147.1
All*Total formula weight31484.5
*Water molecules are not included.

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PDB entries from 2025-06-25

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