5JWE
Crystal structure of H-2Db in complex with the LCMV-derived GP92-101 peptide
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C, E, G (A, C, E, G) | H-2 class I histocompatibility antigen, D-B alpha chain | polymer | 276 | 32087.7 | 4 | UniProt (P01899) Pfam (PF00129) Pfam (PF07654) | Mus musculus (Mouse) | H-2D(B) |
| 2 | B, D, F, H (B, D, F, H) | Beta-2-microglobulin | polymer | 99 | 11704.4 | 4 | UniProt (P01887) Pfam (PF07654) | Mus musculus (Mouse) | |
| 3 | I, J, K, L (P, Q, R, S) | Pre-glycoprotein polyprotein GP complex | polymer | 10 | 1147.2 | 4 | UniProt (P09991) | Lymphocytic choriomeningitis virus | |
| 4 | BA, CA, DA, FA, IA... (F, G, H, A, B...) | SULFATE ION | non-polymer | 96.1 | 13 | Chemie (SO4) | |||
| 5 | AA, EA, GA, HA, MA... (E, F, G, H, A...) | GLYCEROL | non-polymer | 92.1 | 15 | Chemie (GOL) | |||
| 6 | OA, PA, QA, RA, SA... (A, B, C, D, E...) | water | water | 18.0 | 273 | Chemie (HOH) |
Sequence modifications
B, D, F, H: 1 - 99 (UniProt: P01887)
| PDB | External Database | Details |
|---|---|---|
| Asp 85 | Ala 105 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 12 |
| Total formula weight | 179757.1 | |
| Non-Polymers* | Number of molecules | 28 |
| Total formula weight | 2630.2 | |
| All* | Total formula weight | 182387.4 |
