5JQS
Crystal structure of deubiquitinase MINDY-1 in complex with Ubiquitin
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Protein FAM63A | polymer | 289 | 32038.2 | 1 | UniProt (Q8N5J2) Pfam (PF04424) | Homo sapiens (Human) | |
| 2 | B (D) | Ubiquitin-40S ribosomal protein S27a | polymer | 76 | 8576.8 | 1 | UniProt (P62992) Pfam (PF00240) | Bos taurus (Bovine) | Ubiquitin carboxyl extension protein 80 |
| 3 | C (A) | prop-2-en-1-amine | non-polymer | 57.1 | 1 | Chemie (AYE) | |||
| 4 | D, E, H (A, D) | SULFATE ION | non-polymer | 96.1 | 3 | Chemie (SO4) | |||
| 5 | F (A) | CHLORIDE ION | non-polymer | 35.5 | 1 | Chemie (CL) | |||
| 6 | G (A) | 1,4-DIETHYLENE DIOXIDE | non-polymer | 88.1 | 1 | Chemie (DIO) | |||
| 7 | I, J (A, D) | water | water | 18.0 | 53 | Chemie (HOH) |
Sequence modifications
A: 110 - 384 (UniProt: Q8N5J2)
| PDB | External Database | Details |
|---|---|---|
| Gly 96 | - | expression tag |
| Pro 97 | - | expression tag |
| Leu 98 | - | expression tag |
| Gly 99 | - | expression tag |
| Ser 100 | - | expression tag |
| Pro 101 | - | expression tag |
| Glu 102 | - | expression tag |
| Phe 103 | - | expression tag |
| Pro 104 | - | expression tag |
| Gly 105 | - | expression tag |
| Arg 106 | - | expression tag |
| Leu 107 | - | expression tag |
| Glu 108 | - | expression tag |
| Met 109 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 40615.0 | |
| Non-Polymers* | Number of molecules | 6 |
| Total formula weight | 468.8 | |
| All* | Total formula weight | 41083.9 |
