Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5JQS

Crystal structure of deubiquitinase MINDY-1 in complex with Ubiquitin

Functional Information from GO Data
ChainGOidnamespacecontents
A0004843molecular_functioncysteine-type deubiquitinase activity
A1990380molecular_functionK48-linked deubiquitinase activity
Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue AYE A 401
ChainResidue
AGLN131
AGLY135
ACYS137
AASN318
AHIS319
AHOH509
DGLY75

site_idAC2
Number of Residues3
Detailsbinding site for residue SO4 A 402
ChainResidue
ALYS325
ALYS307
AGLU308

site_idAC3
Number of Residues2
Detailsbinding site for residue SO4 A 403
ChainResidue
AARG264
ALEU276

site_idAC4
Number of Residues3
Detailsbinding site for residue CL A 404
ChainResidue
AGLN149
AGLY309
ALEU311

site_idAC5
Number of Residues1
Detailsbinding site for residue DIO A 405
ChainResidue
ATHR303

site_idAC6
Number of Residues2
Detailsbinding site for residue SO4 D 101
ChainResidue
AHOH508
DARG72

Functional Information from PROSITE/UniProt
site_idPS00299
Number of Residues26
DetailsUBIQUITIN_1 Ubiquitin domain signature. KakIqDkegIPpdqQrLIFaGkqleD
ChainResidueDetails
DLYS27-ASP52

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsActive site: {"description":"Nucleophile","evidences":[{"source":"PubMed","id":"27292798","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues1
DetailsActive site: {"description":"Proton acceptor","evidences":[{"source":"PubMed","id":"27292798","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues2
DetailsSite: {"description":"Interacts with activating enzyme"}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues1
DetailsSite: {"description":"Essential for function"}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues1
DetailsModified residue: {"description":"Phosphoserine; by PINK1","evidences":[{"source":"UniProtKB","id":"P62979","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues8
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"UniProtKB","id":"P62979","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

247947

PDB entries from 2026-01-21

PDB statisticsPDBj update infoContact PDBjnumon