5INK
Mouse Tdp2 reaction product (5'-phosphorylated DNA)-abasic/THF-Mg2+ complex
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B | Tyrosyl-DNA phosphodiesterase 2 | polymer | 256 | 28905.2 | 2 | UniProt (Q9JJX7) Pfam (PF03372) In PDB | Mus musculus (Mouse) | Tyr-DNA phosphodiesterase 2,5'-tyrosyl-DNA phosphodiesterase,5'-Tyr-DNA phosphodiesterase,TRAF and TNF receptor-associated protein |
| 2 | C, D | DNA (5'-D(P*(3DR)P*CP*GP*AP*AP*TP*TP*CP*G)-3') | polymer | 9 | 2606.7 | 2 | Homo sapiens | ||
| 3 | A | GLYCEROL | non-polymer | 92.1 | 1 | Chemie (GOL) | |||
| 4 | A, B | MAGNESIUM ION | non-polymer | 24.3 | 2 | Chemie (MG) | |||
| 5 | B | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID | non-polymer | 238.3 | 1 | Chemie (EPE) | |||
| 6 | B | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 1 | Chemie (PEG) | |||
| 7 | water | water | 18.0 | 441 | Chemie (HOH) |
Sequence modifications
A, B: 118 - 370 (UniProt: Q9JJX7)
| PDB | External Database | Details |
|---|---|---|
| Ser 115 | - | expression tag |
| Lys 116 | - | expression tag |
| Gly 117 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 63023.9 | |
| Non-Polymers* | Number of molecules | 5 |
| Total formula weight | 485.1 | |
| All* | Total formula weight | 63509.0 |
