5HRL
The crystal structure of AsfvPolX: 1nt-gap(P) DNA2: dGTP ternary complex.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, E (A, B) | DNA polymerase beta-like protein | polymer | 178 | 20609.7 | 2 | UniProt (A0A0A1E3N6) Pfam (PF01909) Pfam (PF14791) UniProt (by SIFTS) (P42494) | African swine fever virus (ASFV) | PO174L, PolX |
| 2 | B, F (C, F) | DNA (5'-D(*CP*GP*TP*TP*CP*TP*AP*TP*GP*TP*GP*TP*AP*CP*TP*CP*AP*C)-3') | polymer | 18 | 5457.5 | 2 | synthetic construct | ||
| 3 | C, G (D, G) | DNA (5'-D(*GP*TP*GP*AP*GP*TP*AP*CP*A)-3') | polymer | 9 | 2779.8 | 2 | synthetic construct | ||
| 4 | D, H (E, H) | DNA (5'-D(P*AP*TP*AP*GP*AP*AP*CP*G)-3') | polymer | 8 | 2459.7 | 2 | synthetic construct | ||
| 5 | I, M (A, B) | 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE | non-polymer | 507.2 | 2 | Chemie (DGT) | |||
| 6 | J, K, N, O (A, B) | MANGANESE (II) ION | non-polymer | 54.9 | 4 | Chemie (MN) | |||
| 7 | L (A) | GLYCEROL | non-polymer | 92.1 | 1 | Chemie (GOL) | |||
| 8 | P, Q, R, S, T... (A, C, D, B, F...) | water | water | 18.0 | 45 | Chemie (HOH) |
Sequence modifications
A, B: 1 - 174 (UniProt: A0A0A1E3N6)
| PDB | External Database | Details |
|---|---|---|
| Ser -3 | - | expression tag |
| Gly -2 | - | expression tag |
| Gly -1 | - | expression tag |
| Gly 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 8 |
| Total formula weight | 62613.5 | |
| Non-Polymers* | Number of molecules | 7 |
| Total formula weight | 1326.2 | |
| All* | Total formula weight | 63939.7 |
