5GAK
Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (1) | 25S rRNA | polymer | 3396 | 1097493.9 | 1 | GenBank (834774822) | Saccharomyces cerevisiae (Baker's yeast) | |
| 2 | B (X) | 60S ribosomal protein L23-A | polymer | 137 | 14494.0 | 1 | UniProt (P0CX41) Pfam (PF00238) | Saccharomyces cerevisiae (Baker's yeast) | L17a,YL32 |
| 3 | C (3) | 5S rRNA | polymer | 121 | 38951.1 | 1 | GenBank (834774822) | Saccharomyces cerevisiae (Baker's yeast) | |
| 4 | D (Y) | 60S ribosomal protein L24-A | polymer | 155 | 17661.7 | 1 | UniProt (P04449) Pfam (PF01246) | Saccharomyces cerevisiae (Baker's yeast) | L30,RP29,YL21 |
| 5 | E (4) | 5.8S rRNA | polymer | 158 | 50682.9 | 1 | GenBank (940534893) | Saccharomyces cerevisiae (Baker's yeast) | |
| 6 | F (Z) | 60S ribosomal protein L25 | polymer | 142 | 15787.6 | 1 | UniProt (P04456) Pfam (PF03939) Pfam (PF00276) | Saccharomyces cerevisiae (Baker's yeast) | RP16L,YL25,YP42' |
| 7 | G (A) | The A-site tRNA was modeled based on an E. coli tRNA-Lys | polymer | 76 | 24378.4 | 1 | Saccharomyces cerevisiae (Baker's yeast) | ||
| 8 | H (a) | 60S ribosomal protein L26-A | polymer | 127 | 14265.8 | 1 | UniProt (P05743) Pfam (PF16906) Pfam (PF00467) | Saccharomyces cerevisiae (Baker's yeast) | L33,YL33 |
| 9 | I (B) | P-site tRNA | polymer | 77 | 24815.7 | 1 | Saccharomyces cerevisiae (Baker's yeast) | ||
| 10 | J (b) | 60S ribosomal protein L27-A | polymer | 136 | 15568.4 | 1 | UniProt (P0C2H6) Pfam (PF01777) | Saccharomyces cerevisiae (Baker's yeast) | |
| 11 | K (C) | 60S ribosomal protein L42-A | polymer | 106 | 12246.7 | 1 | UniProt (P0CX27) Pfam (PF00935) | Saccharomyces cerevisiae (Baker's yeast) | L41,YL27,YP44 |
| 12 | L (c) | 60S ribosomal protein L28 | polymer | 149 | 16761.7 | 1 | UniProt (P02406) Pfam (PF00828) | Saccharomyces cerevisiae (Baker's yeast) | L27a,L29,RP44,RP62,YL24 |
| 13 | M (D) | 60S ribosomal protein L43-A | polymer | 92 | 10113.0 | 1 | UniProt (P0CX25) Pfam (PF01780) | Saccharomyces cerevisiae (Baker's yeast) | L37a,YL35 |
| 14 | N (d) | 60S ribosomal protein L29 | polymer | 59 | 6691.9 | 1 | UniProt (P05747) Pfam (PF01779) | Saccharomyces cerevisiae (Baker's yeast) | YL43 |
| 15 | O (E) | 60S ribosomal protein L2-A | polymer | 254 | 27463.6 | 1 | UniProt (P0CX45) Pfam (PF00181) Pfam (PF03947) | Saccharomyces cerevisiae (Baker's yeast) | L5,RP8,YL6 |
| 16 | P (e) | 60S ribosomal protein L30 | polymer | 105 | 11430.4 | 1 | UniProt (P14120) Pfam (PF01248) | Saccharomyces cerevisiae (Baker's yeast) | L32,RP73,YL38 |
| 17 | Q (F) | 60S ribosomal protein L3 | polymer | 387 | 43850.8 | 1 | UniProt (P14126) Pfam (PF00297) | Saccharomyces cerevisiae (Baker's yeast) | Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1 |
| 18 | R (f) | 60S ribosomal protein L31-A | polymer | 109 | 12649.8 | 1 | UniProt (P0C2H8) Pfam (PF01198) | Saccharomyces cerevisiae (Baker's yeast) | L34,YL28 |
| 19 | S (G) | 60S ribosomal protein L4-A | polymer | 362 | 39159.1 | 1 | UniProt (P10664) Pfam (PF00573) Pfam (PF14374) | Saccharomyces cerevisiae (Baker's yeast) | L2,RP2,YL2 |
| 20 | T (g) | 60S ribosomal protein L32 | polymer | 130 | 14809.4 | 1 | UniProt (P38061) Pfam (PF01655) | Saccharomyces cerevisiae (Baker's yeast) | |
| 21 | U (H) | 60S ribosomal protein L5 | polymer | 297 | 33764.8 | 1 | UniProt (P26321) Pfam (PF17144) Pfam (PF14204) | Saccharomyces cerevisiae (Baker's yeast) | L1,L1a,Ribosomal 5S RNA-binding protein,YL3 |
| 22 | V (h) | 60S ribosomal protein L33-A | polymer | 107 | 12177.1 | 1 | UniProt (P05744) Pfam (PF01247) | Saccharomyces cerevisiae (Baker's yeast) | L37,RP47,YL37 |
| 23 | W (I) | 60S ribosomal protein L6-A | polymer | 176 | 20000.6 | 1 | UniProt (Q02326) Pfam (PF01159) | Saccharomyces cerevisiae (Baker's yeast) | L17,RP18,YL16 |
| 24 | X (i) | 60S ribosomal protein L34-A | polymer | 121 | 13673.2 | 1 | UniProt (P87262) Pfam (PF01199) | Saccharomyces cerevisiae (Baker's yeast) | |
| 25 | Y (J) | 60S ribosomal protein L7-A | polymer | 244 | 27686.3 | 1 | UniProt (P05737) Pfam (PF08079) Pfam (PF00327) | Saccharomyces cerevisiae (Baker's yeast) | L6,RP11,YL8 |
| 26 | Z (j) | 60S ribosomal protein L35-A | polymer | 120 | 13942.6 | 1 | UniProt (P0CX84) Pfam (PF00831) | Saccharomyces cerevisiae (Baker's yeast) | |
| 27 | AA (K) | 60S ribosomal protein L8-A | polymer | 256 | 28175.8 | 1 | UniProt (P17076) Pfam (PF01248) | Saccharomyces cerevisiae (Baker's yeast) | L4,L4-2,L7a-1,Maintenance of killer protein 7,RP6,YL5 |
| 28 | BA (k) | 60S ribosomal protein L36-A | polymer | 100 | 11151.3 | 1 | UniProt (P05745) Pfam (PF01158) | Saccharomyces cerevisiae (Baker's yeast) | L39,YL39 |
| 29 | CA (L) | 60S ribosomal protein L9-A | polymer | 191 | 21605.1 | 1 | UniProt (P05738) Pfam (PF00347) | Saccharomyces cerevisiae (Baker's yeast) | L8,RP24,YL11 |
| 30 | DA (l) | 60S ribosomal protein L37-A | polymer | 88 | 9877.4 | 1 | UniProt (P49166) Pfam (PF01907) | Saccharomyces cerevisiae (Baker's yeast) | L43,YL35,YP55 |
| 31 | EA (M) | 60S ribosomal protein L11-A | polymer | 174 | 19755.7 | 1 | UniProt (P0C0W9) Pfam (PF00281) Pfam (PF00673) | Saccharomyces cerevisiae (Baker's yeast) | L16,RP39,YL22 |
| 32 | FA (m) | 60S ribosomal protein L38 | polymer | 78 | 8845.6 | 1 | UniProt (P49167) Pfam (PF01781) | Saccharomyces cerevisiae (Baker's yeast) | |
| 33 | GA (N) | 60S ribosomal protein L13-A | polymer | 199 | 22604.2 | 1 | UniProt (Q12690) Pfam (PF01294) | Saccharomyces cerevisiae (Baker's yeast) | |
| 34 | HA (n) | 60S ribosomal protein L39 | polymer | 51 | 6358.6 | 1 | UniProt (P04650) Pfam (PF00832) | Saccharomyces cerevisiae (Baker's yeast) | L46,YL40 |
| 35 | IA (O) | 60S ribosomal protein L14-B | polymer | 138 | 15195.1 | 1 | UniProt (P36105) Pfam (PF00467) Pfam (PF01929) | Saccharomyces cerevisiae (Baker's yeast) | |
| 36 | JA (o) | Ubiquitin-60S ribosomal protein L40 | polymer | 128 | 14583.1 | 1 | UniProt (P0CH08) Pfam (PF00240) Pfam (PF01020) | Saccharomyces cerevisiae (Baker's yeast) | |
| 37 | KA (P) | 60S ribosomal protein L15-A | polymer | 204 | 24482.4 | 1 | UniProt (P05748) Pfam (PF00827) | Saccharomyces cerevisiae (Baker's yeast) | L13,RP15R,YL10,YP18 |
| 38 | LA (p) | 60S ribosomal protein L41-A | polymer | 25 | 3354.2 | 1 | UniProt (P0CX86) Pfam (PF05162) | Saccharomyces cerevisiae (Baker's yeast) | L47,YL41 |
| 39 | MA (Q) | 60S ribosomal protein L16-A | polymer | 199 | 22247.2 | 1 | UniProt (P26784) Pfam (PF00572) | Saccharomyces cerevisiae (Baker's yeast) | L13a,L21,RP22,YL15 |
| 40 | NA (q) | Eukaryotic translation initiation factor 5A-1 | polymer | 157 | 17222.4 | 1 | UniProt (P23301) Pfam (PF21485) Pfam (PF01287) | Saccharomyces cerevisiae (Baker's yeast) | eIF-5A-1,Hypusine-containing protein HP2,eIF-4D |
| 41 | OA (R) | 60S ribosomal protein L17-A | polymer | 184 | 20589.5 | 1 | UniProt (P05740) Pfam (PF00237) | Saccharomyces cerevisiae (Baker's yeast) | L20A,YL17 |
| 42 | PA (r) | ribosomal protein RPL1 | polymer | 210 | 17890.0 | 1 | Saccharomyces cerevisiae (Baker's yeast) | ||
| 43 | QA (S) | 60S ribosomal protein L18-A | polymer | 186 | 20609.3 | 1 | UniProt (P0CX49) Pfam (PF17135) | Saccharomyces cerevisiae (Baker's yeast) | RP28 |
| 44 | RA (s) | 60S ribosomal protein L10 | polymer | 221 | 25410.5 | 1 | UniProt (P41805) Pfam (PF00252) | Saccharomyces cerevisiae (Baker's yeast) | L9,Ubiquinol-cytochrome C reductase complex subunit VI-requiring protein |
| 45 | SA (T) | 60S ribosomal protein L19-A | polymer | 189 | 21762.3 | 1 | UniProt (P0CX82) Pfam (PF01280) Pfam (PF25476) | Saccharomyces cerevisiae (Baker's yeast) | L23,RP15L,RP33,YL14 |
| 46 | TA (U) | 60S ribosomal protein L20-A | polymer | 172 | 20478.9 | 1 | UniProt (P0CX23) Pfam (PF01775) | Saccharomyces cerevisiae (Baker's yeast) | L18a |
| 47 | UA (V) | 60S ribosomal protein L21-A | polymer | 160 | 18279.3 | 1 | UniProt (Q02753) Pfam (PF01157) | Saccharomyces cerevisiae (Baker's yeast) | |
| 48 | VA (W) | 60S ribosomal protein L22-A | polymer | 121 | 13711.4 | 1 | UniProt (P05749) Pfam (PF01776) | Saccharomyces cerevisiae (Baker's yeast) | L1c,RP4,YL31 |
| 49 | WA (z) | nascent polypeptide chain | polymer | 23 | 1975.4 | 1 | Saccharomyces cerevisiae (Baker's yeast) | ||
| 50 | XA (1) | 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione | non-polymer | 281.3 | 1 | Chemie (3HE) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 49 |
| Total formula weight | 2016684.7 | |
| Non-Polymers* | Number of molecules | 1 |
| Total formula weight | 281.3 | |
| All* | Total formula weight | 2016966.0 |
