5FIR
Crystal structure of C. elegans XRN2 in complex with the XRN2-binding domain of PAXT-1
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, C, E, G, I... | 5'-3' EXORIBONUCLEASE 2 HOMOLOG | polymer | 636 | 74909.1 | 6 | UniProt (Q9U299) Pfam (PF03159) Pfam (PF17846) In PDB | CAENORHABDITIS ELEGANS | |
2 | B, D, F, H, J... | PAXT-1 | polymer | 78 | 8988.9 | 6 | UniProt (Q21738) Pfam (PF11952) In PDB | CAENORHABDITIS ELEGANS | |
3 | E, G, I, K, A... | SULFATE ION | non-polymer | 96.1 | 27 | Chemie (SO4) | |||
4 | water | water | 18.0 | 53 | Chemie (HOH) |
Sequence modifications
A, C, E, G, I, K: 2 - 787 (UniProt: Q9U299)
B, D, F, H, J, L: 2 - 75 (UniProt: Q21738)
PDB | External Database | Details |
---|---|---|
Mse 1 | - | initiating methionine |
- | Pro 258 | deletion |
- | Asn 259 | deletion |
- | Gln 260 | deletion |
- | Pro 261 | deletion |
- | Arg 262 | deletion |
- | Ala 263 | deletion |
- | Cys 264 | deletion |
- | Asp 265 | deletion |
- | Leu 266 | deletion |
- | Cys 267 | deletion |
- | Gly 268 | deletion |
- | Gln 269 | deletion |
- | Tyr 270 | deletion |
- | Gly 271 | deletion |
- | His 272 | deletion |
- | Glu 273 | deletion |
- | Leu 274 | deletion |
- | Lys 275 | deletion |
- | Glu 276 | deletion |
- | Cys 277 | deletion |
- | Arg 278 | deletion |
- | Gly 279 | deletion |
- | Ala 280 | deletion |
- | Glu 281 | deletion |
- | Asn 282 | deletion |
- | Glu 283 | deletion |
- | Thr 284 | deletion |
- | Asp 285 | deletion |
- | Leu 286 | deletion |
- | Gly 287 | deletion |
- | Asp 288 | deletion |
- | Asp 289 | deletion |
- | Tyr 290 | deletion |
- | Cys 291 | deletion |
- | Lys 292 | deletion |
- | Pro 293 | deletion |
- | Glu 294 | deletion |
- | Arg 418 | deletion |
- | Asn 419 | deletion |
- | Lys 420 | deletion |
- | Lys 421 | deletion |
- | Ala 422 | deletion |
- | Arg 423 | deletion |
- | Met 424 | deletion |
- | Gln 425 | deletion |
- | Met 426 | deletion |
- | Tyr 427 | deletion |
- | Gly 428 | deletion |
- | Gly 429 | deletion |
- | Gly 430 | deletion |
- | Gly 431 | deletion |
- | Arg 432 | deletion |
- | Gly 433 | deletion |
- | Gly 434 | deletion |
- | Arg 435 | deletion |
- | Gly 436 | deletion |
- | Arg 437 | deletion |
- | Gly 438 | deletion |
- | Arg 439 | deletion |
- | Gly 440 | deletion |
- | Arg 441 | deletion |
- | Gly 442 | deletion |
- | Gln 443 | deletion |
- | Gln 444 | deletion |
- | Pro 445 | deletion |
- | Ala 446 | deletion |
- | Phe 447 | deletion |
- | Val 448 | deletion |
- | Pro 449 | deletion |
- | Thr 450 | deletion |
- | His 451 | deletion |
- | Gly 452 | deletion |
- | Ile 453 | deletion |
- | Leu 454 | deletion |
- | Ala 455 | deletion |
- | Pro 456 | deletion |
- | Met 457 | deletion |
- | Ala 458 | deletion |
- | Ala 459 | deletion |
- | Pro 460 | deletion |
- | Met 461 | deletion |
- | His 462 | deletion |
- | His 463 | deletion |
- | Ser 464 | deletion |
- | Gly 465 | deletion |
- | Glu 466 | deletion |
- | Ser 467 | deletion |
- | Thr 468 | deletion |
- | Arg 469 | deletion |
- | Gln 470 | deletion |
- | Met 471 | deletion |
- | Ala 472 | deletion |
- | Ser 473 | deletion |
- | Glu 474 | deletion |
- | Ala 475 | deletion |
- | Arg 476 | deletion |
- | Gln 477 | deletion |
- | Thr 478 | deletion |
- | Ala 479 | deletion |
- | Met 480 | deletion |
- | Lys 481 | deletion |
- | Phe 482 | deletion |
- | Thr 483 | deletion |
- | Asn 484 | deletion |
- | Asp 485 | deletion |
- | Ala 486 | deletion |
- | Asn 487 | deletion |
- | Glu 488 | deletion |
- | Thr 489 | deletion |
- | Ala 490 | deletion |
- | Ala 491 | deletion |
- | Ala 492 | deletion |
- | Asn 493 | deletion |
- | Leu 494 | deletion |
- | Lys 495 | deletion |
- | Ala 496 | deletion |
- | Leu 497 | deletion |
- | Leu 498 | deletion |
- | Asn 499 | deletion |
- | Val 500 | deletion |
- | Lys 501 | deletion |
- | Gly 502 | deletion |
- | Glu 503 | deletion |
- | Glu 504 | deletion |
- | Ser 505 | deletion |
- | Pro 506 | deletion |
- | Ala 507 | deletion |
- | Asp 508 | deletion |
- | Ile 509 | deletion |
- | Ala 510 | deletion |
- | Ser 511 | deletion |
- | Arg 512 | deletion |
- | Lys 513 | deletion |
- | Arg 514 | deletion |
- | Lys 515 | deletion |
- | Ala 516 | deletion |
- | Glu 517 | deletion |
- | Gln 518 | deletion |
- | Pro 519 | deletion |
- | Leu 520 | deletion |
- | Ile 521 | deletion |
- | Lys 522 | deletion |
- | Pro 523 | deletion |
- | Glu 524 | deletion |
- | Glu 525 | deletion |
- | Glu 526 | deletion |
- | Glu 527 | deletion |
- | Asp 528 | deletion |
- | Glu 529 | deletion |
- | Gly 530 | deletion |
- | Pro 531 | deletion |
PDB | External Database | Details |
---|---|---|
Gly -2 | - | expression tag |
Gly -1 | - | expression tag |
Gly 0 | - | expression tag |
Arg 1 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 12 |
Total formula weight | 503387.7 | |
Non-Polymers* | Number of molecules | 27 |
Total formula weight | 2593.7 | |
All* | Total formula weight | 505981.4 |