5FCB
Murine SMPDL3A in complex with AMP
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Acid sphingomyelinase-like phosphodiesterase 3a | polymer | 433 | 48997.3 | 1 | UniProt (P70158) Pfam (PF00149) Pfam (PF19272) | Mus musculus (Mouse) | ASM-like phosphodiesterase 3a |
| 2 | B, C (B, C) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 570.5 | 2 | In PDB GlyTouCan (G21290RB) | |||
| 3 | D (D) | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 1 | In PDB GlyTouCan (G22768VO) | |||
| 4 | E (E) | alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 367.3 | 1 | In PDB GlyTouCan (G86851RC) | |||
| 5 | F, G (A) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
| 6 | H (A) | ADENOSINE MONOPHOSPHATE | non-polymer | 347.2 | 1 | Chemie (AMP) | |||
| 7 | I, J, K, L, M... (A) | GLYCEROL | non-polymer | 92.1 | 10 | Chemie (GOL) | |||
| 8 | S (A) | water | water | 18.0 | 512 | Chemie (HOH) |
Sequence modifications
A: 23 - 445 (UniProt: P70158)
| PDB | External Database | Details |
|---|---|---|
| Asp 13 | - | expression tag |
| Arg 14 | - | expression tag |
| His 15 | - | expression tag |
| His 16 | - | expression tag |
| His 17 | - | expression tag |
| His 18 | - | expression tag |
| His 19 | - | expression tag |
| His 20 | - | expression tag |
| Lys 21 | - | expression tag |
| Leu 22 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 48997.3 | |
| Branched | Number of molecules | 4 |
| Total formula weight | 2419.3 | |
| Non-Polymers* | Number of molecules | 13 |
| Total formula weight | 1399.0 | |
| All* | Total formula weight | 52815.5 |






