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5FCB

Murine SMPDL3A in complex with AMP

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Acid sphingomyelinase-like phosphodiesterase 3apolymer43348997.31UniProt (P70158)
Pfam (PF00149)
Pfam (PF19272)
Mus musculus (Mouse)ASM-like phosphodiesterase 3a
2B, C
(B, C)
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranosebranched570.52In PDB
GlyTouCan (G21290RB)
3D
(D)
alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched910.81In PDB
GlyTouCan (G22768VO)
4E
(E)
alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched367.31In PDB
GlyTouCan (G86851RC)
5F, G
(A)
ZINC IONnon-polymer65.42Chemie (ZN)
6H
(A)
ADENOSINE MONOPHOSPHATEnon-polymer347.21Chemie (AMP)
7I, J, K, L, M...
(A)
GLYCEROLnon-polymer92.110Chemie (GOL)
8S
(A)
waterwater18.0512Chemie (HOH)
Sequence modifications
A: 23 - 445 (UniProt: P70158)
PDBExternal DatabaseDetails
Asp 13-expression tag
Arg 14-expression tag
His 15-expression tag
His 16-expression tag
His 17-expression tag
His 18-expression tag
His 19-expression tag
His 20-expression tag
Lys 21-expression tag
Leu 22-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight48997.3
BranchedNumber of molecules4
Total formula weight2419.3
Non-Polymers*Number of molecules13
Total formula weight1399.0
All*Total formula weight52815.5
*Water molecules are not included.

246031

PDB entries from 2025-12-10

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