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5FC6

Murine SMPDL3A in complex with ADP analog AMPCP

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Acid sphingomyelinase-like phosphodiesterase 3apolymer43348997.31UniProt (P70158)
Pfam (PF00149)
Pfam (PF19272)
Mus musculus (Mouse)ASM-like phosphodiesterase 3a
2B, E
(B, E)
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranosebranched570.52In PDB
GlyTouCan (G21290RB)
3C
(C)
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched424.41In PDB
GlyTouCan (G42666HT)
4D
(D)
alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched910.81In PDB
GlyTouCan (G22768VO)
5F, G
(A)
ZINC IONnon-polymer65.42Chemie (ZN)
6H, I, J, K
(A)
GLYCEROLnon-polymer92.14Chemie (GOL)
7L
(A)
PHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTERnon-polymer425.21Chemie (AP2)
8M
(A)
waterwater18.0520Chemie (HOH)
Sequence modifications
A: 23 - 445 (UniProt: P70158)
PDBExternal DatabaseDetails
Asp 13-expression tag
Arg 14-expression tag
His 15-expression tag
His 16-expression tag
His 17-expression tag
His 18-expression tag
His 19-expression tag
His 20-expression tag
Lys 21-expression tag
Leu 22-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight48997.3
BranchedNumber of molecules4
Total formula weight2476.3
Non-Polymers*Number of molecules7
Total formula weight924.4
All*Total formula weight52398.0
*Water molecules are not included.

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PDB entries from 2025-11-05

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