5EDM
Crystal structure of prothrombin deletion mutant residues 154-167 ( Form I )
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A | Prothrombin | polymer | 568 | 64839.2 | 1 | UniProt (P00734) Pfam (PF00594) Pfam (PF00051) Pfam (PF09396) Pfam (PF00089) In PDB | Homo sapiens (Human) | Coagulation factor II |
| 2 | B, C | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 2 | In PDB GlyTouCan (G42666HT) | |||
| 3 | A | MAGNESIUM ION | non-polymer | 24.3 | 6 | Chemie (MG) | |||
| 4 | A | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 1 | Chemie (NAG) | |||
| 5 | A | SULFATE ION | non-polymer | 96.1 | 9 | Chemie (SO4) | |||
| 6 | A | GLYCEROL | non-polymer | 92.1 | 1 | Chemie (GOL) | |||
| 7 | water | water | 18.0 | 464 | Chemie (HOH) |
Sequence modifications
A: 1 - 565 (UniProt: P00734)
| PDB | External Database | Details |
|---|---|---|
| Met 122 | Thr 165 | conflict |
| - | Pro 197 | deletion |
| - | Arg 198 | deletion |
| - | Ser 199 | deletion |
| - | Glu 200 | deletion |
| - | Gly 201 | deletion |
| - | Ser 202 | deletion |
| - | Ser 203 | deletion |
| - | Val 204 | deletion |
| - | Asn 205 | deletion |
| - | Leu 206 | deletion |
| - | Ser 207 | deletion |
| - | Pro 208 | deletion |
| - | Pro 209 | deletion |
| - | Leu 210 | deletion |
| Tyr 566 | - | expression tag |
| Leu 567 | - | expression tag |
| Glu 568 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 64839.2 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 848.8 | |
| Non-Polymers* | Number of molecules | 17 |
| Total formula weight | 1323.7 | |
| All* | Total formula weight | 67011.7 |
