5EBE
Structure of human sphingomyelinase phosphodiesterase like 3A (SMPDL3A) with 5' CMP
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Acid sphingomyelinase-like phosphodiesterase 3a | polymer | 418 | 47597.6 | 1 | UniProt (Q92484) Pfam (PF00149) Pfam (PF19272) | Homo sapiens (Human) | ASM-like phosphodiesterase 3a |
| 2 | B, C (B, C) | Acid sphingomyelinase-like phosphodiesterase 3a | polymer | 415 | 47192.1 | 2 | UniProt (Q92484) Pfam (PF00149) Pfam (PF19272) | Homo sapiens (Human) | ASM-like phosphodiesterase 3a |
| 3 | D (D) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) | |||
| 4 | E, F, G, H, L... (A, B, C) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 11 | Chemie (NAG) | |||
| 5 | I, J, O, P, Y... (A, B, C) | ZINC ION | non-polymer | 65.4 | 6 | Chemie (ZN) | |||
| 6 | AA, K (C, A) | CYTIDINE-5'-MONOPHOSPHATE | non-polymer | 323.2 | 2 | Chemie (C5P) | |||
| 7 | Q, R (B) | GLYCEROL | non-polymer | 92.1 | 2 | Chemie (GOL) | |||
| 8 | S (B) | MALONATE ION | non-polymer | 102.0 | 1 | Chemie (MLI) | |||
| 9 | T (B) | 5-O-phosphono-beta-D-ribofuranose | non-polymer | 230.1 | 1 | Chemie (RP5) | |||
| 10 | BA, CA (C) | THIOCYANATE ION | non-polymer | 58.1 | 2 | Chemie (SCN) | |||
| 11 | DA, EA, FA (A, B, C) | water | water | 18.0 | 130 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 141981.9 | |
| Branched | Number of molecules | 1 |
| Total formula weight | 424.4 | |
| Non-Polymers* | Number of molecules | 25 |
| Total formula weight | 4104.6 | |
| All* | Total formula weight | 146511.0 |
