5EBE
Structure of human sphingomyelinase phosphodiesterase like 3A (SMPDL3A) with 5' CMP
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Acid sphingomyelinase-like phosphodiesterase 3a | polymer | 418 | 47597.6 | 1 | UniProt (Q92484) Pfam (PF00149) Pfam (PF19272) In PDB | Homo sapiens (Human) | ASM-like phosphodiesterase 3a |
2 | B, C | Acid sphingomyelinase-like phosphodiesterase 3a | polymer | 415 | 47192.1 | 2 | UniProt (Q92484) Pfam (PF00149) Pfam (PF19272) In PDB | Homo sapiens (Human) | ASM-like phosphodiesterase 3a |
3 | D | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) | |||
4 | A, B, C | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 11 | Chemie (NAG) | |||
5 | A, B, C | ZINC ION | non-polymer | 65.4 | 6 | Chemie (ZN) | |||
6 | C, A | CYTIDINE-5'-MONOPHOSPHATE | non-polymer | 323.2 | 2 | Chemie (C5P) | |||
7 | B | GLYCEROL | non-polymer | 92.1 | 2 | Chemie (GOL) | |||
8 | B | MALONATE ION | non-polymer | 102.0 | 1 | Chemie (MLI) | |||
9 | B | 5-O-phosphono-beta-D-ribofuranose | non-polymer | 230.1 | 1 | Chemie (RP5) | |||
10 | C | THIOCYANATE ION | non-polymer | 58.1 | 2 | Chemie (SCN) | |||
11 | water | water | 18.0 | 130 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 3 |
Total formula weight | 141981.9 | |
Branched | Number of molecules | 1 |
Total formula weight | 424.4 | |
Non-Polymers* | Number of molecules | 25 |
Total formula weight | 4104.6 | |
All* | Total formula weight | 146511.0 |