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5DKW

Ternary crystal structure of polymerase lambda with a GA mispair at the primer terminus with Ca2+ in the active

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
DNA polymerase lambdapolymer32736620.82UniProt (Q9UGP5)
Pfam (PF14716)
Pfam (PF10391)
Pfam (PF14792)
Pfam (PF14791)
Homo sapiens (Human)Pol Lambda,DNA polymerase beta-2,Pol beta2,DNA polymerase kappa
2C, F
(D, C)
DNA (5'-D(P*GP*CP*CP*G)-3')polymer41191.82synthetic construct
3D, G
(P, E)
DNA (5'-D(*CP*AP*GP*TP*AP*C)-3')polymer61793.22synthetic construct
4E, H
(T, F)
DNA (5'-D(*CP*GP*GP*CP*GP*GP*TP*AP*CP*TP*G)-3')polymer113390.22synthetic construct
5I, N
(A, B)
2'-DEOXYADENOSINE 5'-TRIPHOSPHATEnon-polymer491.22Chemie (DTP)
6J, K, L, M, O
(A, B)
CALCIUM IONnon-polymer40.15Chemie (CA)
7P, Q, R, S, T...
(A, B, D, P, T...)
waterwater18.0205Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains8
Total formula weight85992.0
Non-Polymers*Number of molecules7
Total formula weight1182.8
All*Total formula weight87174.8
*Water molecules are not included.

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PDB entries from 2025-07-30

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