5D8B
Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, WA (A, WA) | 50S ribosomal protein L2 | polymer | 271 | 29828.6 | 2 | UniProt (Q72I07) Pfam (PF00181) Pfam (PF03947) UniProt (by SIFTS) (P60405) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 2 | B, XA (B, XA) | 50S ribosomal protein L3 | polymer | 206 | 22450.2 | 2 | UniProt (Q72I04) Pfam (PF00297) UniProt (by SIFTS) (Q5SHN8) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 3 | C, YA (C, YA) | 50S ribosomal protein L4 | polymer | 205 | 22744.3 | 2 | UniProt (Q72I05) Pfam (PF00573) UniProt (by SIFTS) (Q5SHN9) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 4 | D, ZA (D, ZA) | 50S ribosomal protein L5 | polymer | 182 | 21075.6 | 2 | UniProt (Q72I16) Pfam (PF00281) Pfam (PF00673) UniProt (by SIFTS) (Q5SHQ0) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 5 | AB, E (E, AB) | 50S ribosomal protein L6 | polymer | 180 | 19568.9 | 2 | UniProt (Q72I19) Pfam (PF00347) UniProt (by SIFTS) (P0DOY8) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 6 | BB, F (F, BB) | 50S ribosomal protein L9 | polymer | 148 | 16436.2 | 2 | UniProt (Q72GV5) Pfam (PF01281) Pfam (PF03948) UniProt (by SIFTS) (Q5SLQ1) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 7 | CB, G (G, CB) | 50S ribosomal protein L11 | polymer | 147 | 15526.1 | 2 | UniProt (P62442) Pfam (PF03946) Pfam (PF00298) UniProt (by SIFTS) (Q5SLP6) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 8 | DB, H (H, DB) | 50S ribosomal protein L13 | polymer | 140 | 15927.9 | 2 | UniProt (Q72IN1) Pfam (PF00572) UniProt (by SIFTS) (P60488) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 9 | EB, I (I, EB) | 50S ribosomal protein L14 | polymer | 122 | 13309.6 | 2 | UniProt (Q72I14) Pfam (PF00238) UniProt (by SIFTS) (Q5SHP8) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 10 | FB, J (J, FB) | 50S ribosomal protein L15 | polymer | 150 | 16319.1 | 2 | UniProt (Q72I23) Pfam (PF00828) UniProt (by SIFTS) (Q5SHQ7) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 11 | GB, K (K, GB) | 50S ribosomal protein L16 | polymer | 141 | 15977.9 | 2 | UniProt (Q72I11) Pfam (PF00252) UniProt (by SIFTS) (P60489) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 12 | HB, L (L, HB) | 50S ribosomal protein L17 | polymer | 118 | 13750.1 | 2 | UniProt (Q72I33) Pfam (PF01196) UniProt (by SIFTS) (Q9Z9H5) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 13 | IB, M (M, IB) | 50S ribosomal protein L18 | polymer | 112 | 12639.8 | 2 | UniProt (Q72I20) Pfam (PF00861) UniProt (by SIFTS) (Q5SHQ4) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 14 | JB, N (N, JB) | 50S ribosomal protein L19 | polymer | 146 | 17217.9 | 2 | UniProt (Q72JU9) Pfam (PF01245) UniProt (by SIFTS) (P60490) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 15 | KB, O (O, KB) | 50S ribosomal protein L20 | polymer | 118 | 13779.3 | 2 | UniProt (Q72L76) Pfam (PF00453) UniProt (by SIFTS) (P60491) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 16 | LB, P (P, LB) | 50S ribosomal protein L21 | polymer | 101 | 11069.2 | 2 | UniProt (Q72HR2) Pfam (PF00829) UniProt (by SIFTS) (P60492) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 17 | MB, Q (Q, MB) | 50S ribosomal protein L22 | polymer | 113 | 12808.1 | 2 | UniProt (Q72I09) Pfam (PF00237) UniProt (by SIFTS) (Q5SHP3) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 18 | NB, R (R, NB) | 50S ribosomal protein L23 | polymer | 96 | 10759.8 | 2 | UniProt (Q72I06) Pfam (PF00276) UniProt (by SIFTS) (Q5SHP0) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 19 | OB, S (S, OB) | 50S ribosomal protein L24 | polymer | 110 | 12085.6 | 2 | UniProt (Q72I15) Pfam (PF00467) Pfam (PF17136) UniProt (by SIFTS) (Q5SHP9) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 20 | PB, T (T, PB) | 50S ribosomal protein L25 | polymer | 206 | 23238.6 | 2 | UniProt (Q72IA7) Pfam (PF01386) Pfam (PF14693) UniProt (by SIFTS) (Q5SHZ1) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 21 | QB, U (U, QB) | 50S ribosomal protein L27 | polymer | 85 | 9501.1 | 2 | UniProt (Q72HR3) Pfam (PF01016) UniProt (by SIFTS) (P60493) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 22 | RB, V (V, RB) | 50S ribosomal protein L28 | polymer | 98 | 11032.2 | 2 | UniProt (Q72G84) Pfam (PF00830) UniProt (by SIFTS) (P60494) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 23 | SB, W (W, SB) | 50S ribosomal protein L29 | polymer | 72 | 8670.3 | 2 | UniProt (Q72I12) Pfam (PF00831) UniProt (by SIFTS) (Q5SHP6) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 24 | TB, X (X, TB) | 50S ribosomal protein L30 | polymer | 60 | 6799.1 | 2 | UniProt (Q72I22) Pfam (PF00327) UniProt (by SIFTS) (Q5SHQ6) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 25 | UB, Y (Y, UB) | 50S ribosomal protein L32 | polymer | 60 | 6734.1 | 2 | UniProt (P62652) Pfam (PF01783) UniProt (by SIFTS) (P80339) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 26 | VB, Z (Z, VB) | 50S ribosomal protein L33 | polymer | 54 | 6632.9 | 2 | UniProt (Q72GW3) Pfam (PF00471) UniProt (by SIFTS) (P35871) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 27 | AA, WB (AA, WB) | 50S ribosomal protein L34 | polymer | 49 | 6132.4 | 2 | UniProt (P80340) Pfam (PF00468) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 28 | BA, XB (BA, XB) | 50S ribosomal protein L35 | polymer | 65 | 7506.2 | 2 | UniProt (Q72L77) Pfam (PF01632) UniProt (by SIFTS) (Q5SKU1) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 29 | CA, YB (CA, YB) | 30S ribosomal protein S2 | polymer | 256 | 29317.7 | 2 | UniProt (P62662) Pfam (PF00318) UniProt (by SIFTS) (P80371) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 30 | DA, ZB (DA, ZB) | 30S ribosomal protein S3 | polymer | 239 | 26751.1 | 2 | UniProt (P62663) Pfam (PF07650) Pfam (PF00189) UniProt (by SIFTS) (P80372) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 31 | AC, EA (EA, AC) | 30S ribosomal protein S4 | polymer | 209 | 24373.4 | 2 | UniProt (P62664) Pfam (PF00163) Pfam (PF01479) UniProt (by SIFTS) (P80373) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 32 | BC, FA (FA, BC) | 30S ribosomal protein S5 | polymer | 162 | 17583.4 | 2 | UniProt (P62665) Pfam (PF00333) Pfam (PF03719) UniProt (by SIFTS) (Q5SHQ5) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 33 | CC, GA (GA, CC) | 30S ribosomal protein S6 | polymer | 101 | 11988.8 | 2 | UniProt (P62666) Pfam (PF01250) UniProt (by SIFTS) (Q5SLP8) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 34 | DC, HA (HA, DC) | 30S ribosomal protein S7 | polymer | 156 | 18051.0 | 2 | UniProt (P62667) Pfam (PF00177) UniProt (by SIFTS) (P17291) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 35 | EC, IA (IA, EC) | 30S ribosomal protein S8 | polymer | 138 | 15868.6 | 2 | UniProt (P62668) Pfam (PF00410) UniProt (by SIFTS) (P0DOY9) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 36 | FC, JA (JA, FC) | 30S ribosomal protein S9 | polymer | 128 | 14429.7 | 2 | UniProt (P62669) Pfam (PF00380) UniProt (by SIFTS) (P80374) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 37 | GC, KA (KA, GC) | 30S ribosomal protein S10 | polymer | 105 | 11955.0 | 2 | UniProt (P62653) Pfam (PF00338) UniProt (by SIFTS) (Q5SHN7) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 38 | HC, LA (LA, HC) | 30S ribosomal protein S11 | polymer | 129 | 13737.9 | 2 | UniProt (P62654) Pfam (PF00411) UniProt (by SIFTS) (P80376) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 39 | IC, MA (MA, IC) | 30S ribosomal protein S12 | polymer | 132 | 14637.4 | 2 | UniProt (P61941) Pfam (PF00164) UniProt (by SIFTS) (Q5SHN3) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 40 | JC, NA (NA, JC) | 30S ribosomal protein S13 | polymer | 126 | 14338.9 | 2 | UniProt (P62655) Pfam (PF00416) UniProt (by SIFTS) (P80377) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 41 | KC, OA (OA, KC) | 30S ribosomal protein S14 | polymer | 61 | 7158.7 | 2 | UniProt (P62656) Pfam (PF00253) UniProt (by SIFTS) (P0DOY6) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 42 | LC, PA (PA, LC) | 30S ribosomal protein S15 | polymer | 89 | 10578.4 | 2 | UniProt (P62657) Pfam (PF00312) UniProt (by SIFTS) (Q5SJ76) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 43 | MC, QA (QA, MC) | 30S ribosomal protein S16 | polymer | 88 | 10410.0 | 2 | UniProt (P62238) Pfam (PF00886) UniProt (by SIFTS) (Q5SJH3) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 44 | NC, RA (RA, NC) | 30S ribosomal protein S17 | polymer | 105 | 12324.7 | 2 | UniProt (P62658) Pfam (PF00366) UniProt (by SIFTS) (P0DOY7) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 45 | OC, SA (SA, OC) | 30S ribosomal protein S18 | polymer | 88 | 10258.3 | 2 | UniProt (P62659) Pfam (PF01084) UniProt (by SIFTS) (Q5SLQ0) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 46 | PC, TA (TA, PC) | 30S ribosomal protein S19 | polymer | 93 | 10605.5 | 2 | UniProt (P62660) Pfam (PF00203) UniProt (by SIFTS) (Q5SHP2) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 47 | QC, UA (UA, QC) | 30S ribosomal protein S20 | polymer | 106 | 11722.1 | 2 | UniProt (P62661) Pfam (PF01649) UniProt (by SIFTS) (P80380) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 48 | RC, VA (VA, RC) | 30S ribosomal protein Thx | polymer | 27 | 3350.0 | 2 | UniProt (P62613) Pfam (PF17070) UniProt (by SIFTS) (Q5SIH3) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 49 | SC, TC (SC, TC) | 50S ribosomal protein L31 | polymer | 71 | 8300.5 | 2 | UniProt (Q72JR0) Pfam (PF01197) UniProt (by SIFTS) (Q5SJE1) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 50 | UC, YC (UC, YC) | 16S ribosomal RNA | polymer | 1509 | 490001.1 | 2 | GenBank (46197919) | Thermus thermophilus HB27 | |
| 51 | VC, ZC (VC, ZC) | 23S ribosomal RNA | polymer | 2893 | 940743.8 | 2 | GenBank (46197919) | Thermus thermophilus HB27 | |
| 52 | AD, WC (WC, AD) | 5S ribosomal RNA | polymer | 121 | 39211.4 | 2 | GenBank (46197919) | Thermus thermophilus HB27 | |
| 53 | BD, CD, DD, XC (XC, BD, ED, FD) | tRNA | polymer | 77 | 24802.8 | 4 | GenBank (899721066) | Escherichia coli | |
| 54 | ED, FD (GD, HD) | mRNA | polymer | 27 | 8822.4 | 2 | synthetic construct | ||
| 55 | AAA, AAB, AAC, ABA, ABB... (VC, YC, ZC, N, QA...) | MAGNESIUM ION | non-polymer | 24.3 | 2218 | Chemie (MG) | |||
| 56 | AH, ME, SG, VE (KC, EA, AC, OA) | ZINC ION | non-polymer | 65.4 | 4 | Chemie (ZN) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 110 |
| Total formula weight | 4451292.6 | |
| Non-Polymers* | Number of molecules | 2222 |
| Total formula weight | 54170.1 | |
| All* | Total formula weight | 4505462.7 |
