Loading
PDBj
English日本語简体中文繁體中文한국어
✖
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

5D8B

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, WA50S ribosomal protein L2polymer27129828.62UniProt (Q72I07)
Pfam (PF00181)
Pfam (PF03947)
UniProt (by SIFTS) (P60405)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
2B, XA50S ribosomal protein L3polymer20622450.22UniProt (Q72I04)
Pfam (PF00297)
UniProt (by SIFTS) (Q5SHN8)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
3C, YA50S ribosomal protein L4polymer20522744.32UniProt (Q72I05)
Pfam (PF00573)
UniProt (by SIFTS) (Q5SHN9)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
4D, ZA50S ribosomal protein L5polymer18221075.62UniProt (Q72I16)
Pfam (PF00281)
Pfam (PF00673)
UniProt (by SIFTS) (Q5SHQ0)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
5E, AB50S ribosomal protein L6polymer18019568.92UniProt (Q72I19)
Pfam (PF00347)
UniProt (by SIFTS) (P0DOY8)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
6F, BB50S ribosomal protein L9polymer14816436.22UniProt (Q72GV5)
Pfam (PF01281)
Pfam (PF03948)
UniProt (by SIFTS) (Q5SLQ1)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
7G, CB50S ribosomal protein L11polymer14715526.12UniProt (P62442)
Pfam (PF03946)
Pfam (PF00298)
UniProt (by SIFTS) (Q5SLP6)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
8H, DB50S ribosomal protein L13polymer14015927.92UniProt (Q72IN1)
Pfam (PF00572)
UniProt (by SIFTS) (P60488)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
9I, EB50S ribosomal protein L14polymer12213309.62UniProt (Q72I14)
Pfam (PF00238)
UniProt (by SIFTS) (Q5SHP8)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
10J, FB50S ribosomal protein L15polymer15016319.12UniProt (Q72I23)
Pfam (PF00828)
UniProt (by SIFTS) (Q5SHQ7)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
11K, GB50S ribosomal protein L16polymer14115977.92UniProt (Q72I11)
Pfam (PF00252)
UniProt (by SIFTS) (P60489)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
12L, HB50S ribosomal protein L17polymer11813750.12UniProt (Q72I33)
Pfam (PF01196)
UniProt (by SIFTS) (Q9Z9H5)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
13M, IB50S ribosomal protein L18polymer11212639.82UniProt (Q72I20)
Pfam (PF00861)
UniProt (by SIFTS) (Q5SHQ4)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
14N, JB50S ribosomal protein L19polymer14617217.92UniProt (Q72JU9)
Pfam (PF01245)
UniProt (by SIFTS) (P60490)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
15O, KB50S ribosomal protein L20polymer11813779.32UniProt (Q72L76)
Pfam (PF00453)
UniProt (by SIFTS) (P60491)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
16P, LB50S ribosomal protein L21polymer10111069.22UniProt (Q72HR2)
Pfam (PF00829)
UniProt (by SIFTS) (P60492)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
17Q, MB50S ribosomal protein L22polymer11312808.12UniProt (Q72I09)
Pfam (PF00237)
UniProt (by SIFTS) (Q5SHP3)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
18R, NB50S ribosomal protein L23polymer9610759.82UniProt (Q72I06)
Pfam (PF00276)
UniProt (by SIFTS) (Q5SHP0)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
19S, OB50S ribosomal protein L24polymer11012085.62UniProt (Q72I15)
Pfam (PF00467)
Pfam (PF17136)
UniProt (by SIFTS) (Q5SHP9)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
20T, PB50S ribosomal protein L25polymer20623238.62UniProt (Q72IA7)
Pfam (PF01386)
Pfam (PF14693)
UniProt (by SIFTS) (Q5SHZ1)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
21U, QB50S ribosomal protein L27polymer859501.12UniProt (Q72HR3)
Pfam (PF01016)
UniProt (by SIFTS) (P60493)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
22V, RB50S ribosomal protein L28polymer9811032.22UniProt (Q72G84)
Pfam (PF00830)
UniProt (by SIFTS) (P60494)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
23W, SB50S ribosomal protein L29polymer728670.32UniProt (Q72I12)
Pfam (PF00831)
UniProt (by SIFTS) (Q5SHP6)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
24X, TB50S ribosomal protein L30polymer606799.12UniProt (Q72I22)
Pfam (PF00327)
UniProt (by SIFTS) (Q5SHQ6)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
25Y, UB50S ribosomal protein L32polymer606734.12UniProt (P62652)
Pfam (PF01783)
UniProt (by SIFTS) (P80339)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
26Z, VB50S ribosomal protein L33polymer546632.92UniProt (Q72GW3)
Pfam (PF00471)
UniProt (by SIFTS) (P35871)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
27AA, WB50S ribosomal protein L34polymer496132.42UniProt (P80340)
Pfam (PF00468)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
28BA, XB50S ribosomal protein L35polymer657506.22UniProt (Q72L77)
Pfam (PF01632)
UniProt (by SIFTS) (Q5SKU1)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
29CA, YB30S ribosomal protein S2polymer25629317.72UniProt (P62662)
Pfam (PF00318)
UniProt (by SIFTS) (P80371)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
30DA, ZB30S ribosomal protein S3polymer23926751.12UniProt (P62663)
Pfam (PF07650)
Pfam (PF00189)
UniProt (by SIFTS) (P80372)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
31EA, AC30S ribosomal protein S4polymer20924373.42UniProt (P62664)
Pfam (PF00163)
Pfam (PF01479)
UniProt (by SIFTS) (P80373)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
32FA, BC30S ribosomal protein S5polymer16217583.42UniProt (P62665)
Pfam (PF00333)
Pfam (PF03719)
UniProt (by SIFTS) (Q5SHQ5)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
33GA, CC30S ribosomal protein S6polymer10111988.82UniProt (P62666)
Pfam (PF01250)
UniProt (by SIFTS) (Q5SLP8)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
34HA, DC30S ribosomal protein S7polymer15618051.02UniProt (P62667)
Pfam (PF00177)
UniProt (by SIFTS) (P17291)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
35IA, EC30S ribosomal protein S8polymer13815868.62UniProt (P62668)
Pfam (PF00410)
UniProt (by SIFTS) (P0DOY9)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
36JA, FC30S ribosomal protein S9polymer12814429.72UniProt (P62669)
Pfam (PF00380)
UniProt (by SIFTS) (P80374)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
37KA, GC30S ribosomal protein S10polymer10511955.02UniProt (P62653)
Pfam (PF00338)
UniProt (by SIFTS) (Q5SHN7)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
38LA, HC30S ribosomal protein S11polymer12913737.92UniProt (P62654)
Pfam (PF00411)
UniProt (by SIFTS) (P80376)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
39MA, IC30S ribosomal protein S12polymer13214637.42UniProt (P61941)
Pfam (PF00164)
UniProt (by SIFTS) (Q5SHN3)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
40NA, JC30S ribosomal protein S13polymer12614338.92UniProt (P62655)
Pfam (PF00416)
UniProt (by SIFTS) (P80377)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
41OA, KC30S ribosomal protein S14polymer617158.72UniProt (P62656)
Pfam (PF00253)
UniProt (by SIFTS) (P0DOY6)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
42PA, LC30S ribosomal protein S15polymer8910578.42UniProt (P62657)
Pfam (PF00312)
UniProt (by SIFTS) (Q5SJ76)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
43QA, MC30S ribosomal protein S16polymer8810410.02UniProt (P62238)
Pfam (PF00886)
UniProt (by SIFTS) (Q5SJH3)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
44RA, NC30S ribosomal protein S17polymer10512324.72UniProt (P62658)
Pfam (PF00366)
UniProt (by SIFTS) (P0DOY7)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
45SA, OC30S ribosomal protein S18polymer8810258.32UniProt (P62659)
Pfam (PF01084)
UniProt (by SIFTS) (Q5SLQ0)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
46TA, PC30S ribosomal protein S19polymer9310605.52UniProt (P62660)
Pfam (PF00203)
UniProt (by SIFTS) (Q5SHP2)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
47UA, QC30S ribosomal protein S20polymer10611722.12UniProt (P62661)
Pfam (PF01649)
UniProt (by SIFTS) (P80380)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
48VA, RC30S ribosomal protein Thxpolymer273350.02UniProt (P62613)
Pfam (PF17070)
UniProt (by SIFTS) (Q5SIH3)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
49SC, TC50S ribosomal protein L31polymer718300.52UniProt (Q72JR0)
Pfam (PF01197)
UniProt (by SIFTS) (Q5SJE1)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
50UC, YC16S ribosomal RNApolymer1509490001.12GenBank (46197919)Thermus thermophilus HB27
51VC, ZC23S ribosomal RNApolymer2893940743.82GenBank (46197919)Thermus thermophilus HB27
52WC, AD5S ribosomal RNApolymer12139211.42GenBank (46197919)Thermus thermophilus HB27
53XC, BD, ED, FDtRNApolymer7724802.84GenBank (899721066)Escherichia coli
54GD, HDmRNApolymer278822.42synthetic construct
55VC, YC, ZC, N, QA...MAGNESIUM IONnon-polymer24.32218Chemie (MG)
56KC, EA, AC, OAZINC IONnon-polymer65.44Chemie (ZN)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains110
Total formula weight4451292.6
Non-Polymers*Number of molecules2222
Total formula weight54170.1
All*Total formula weight4505462.7
*Water molecules are not included.

223166

PDB entries from 2024-07-31

PDB statisticsPDBj update infoContact PDBjnumon