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5CP6

Nucleosome Core Particle with Adducts from the Anticancer Compound, [(eta6-5,8,9,10-tetrahydroanthracene)Ru(ethylenediamine)Cl][PF6]

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(I)
DNA (145-MER)polymer14544749.71synthetic construct
2B
(J)
DNA (145-MER)polymer14544740.61synthetic construct
3C, G
(A, E)
Histone H3.2polymer13515303.92UniProt (P84233)
Pfam (PF00125)
Xenopus laevis (African clawed frog)
4D, H
(B, F)
Histone H4polymer10211263.22UniProt (P62799)
Pfam (PF15511)
Xenopus laevis (African clawed frog)
5E, I
(C, G)
Histone H2Apolymer12813907.22UniProt (Q6AZJ8)
Pfam (PF00125)
Pfam (PF16211)
UniProt (by SIFTS) (P06897)
Xenopus laevis (African clawed frog)
6F, J
(D, H)
Histone H2B 1.1polymer12513848.12UniProt (P02281)
Pfam (PF00125)
Xenopus laevis (African clawed frog)H2B1.1
7K, L, M
(I, J)
(ethane6-5,8,9,10-tetrahydroanthracene)Ru(II)(ethylene-diamine)Clnon-polymer378.93Chemie (RUH)
8N, P, Q
(D, G, H)
SULFATE IONnon-polymer96.13Chemie (SO4)
9O
(E)
MAGNESIUM IONnon-polymer24.31Chemie (MG)
10R, S, T, U, V...
(J, A, B, C, D...)
waterwater18.035Chemie (HOH)
Sequence modifications
A, E: 1 - 135 (UniProt: P84233)
PDBExternal DatabaseDetails
Ala 102Gly 103variant
C, G: 1 - 128 (UniProt: Q6AZJ8)
PDBExternal DatabaseDetails
-Ala 127deletion
D, H: -2 - 122 (UniProt: P02281)
PDBExternal DatabaseDetails
Thr 29Ser 33variant
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains10
Total formula weight198135.2
Non-Polymers*Number of molecules7
Total formula weight1449.1
All*Total formula weight199584.3
*Water molecules are not included.

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PDB entries from 2025-06-11

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