5A2K
Crystal structure of scFv-SM3 in complex with APD-TGalNAc-RP
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | H | IG LAMBDA-1 CHAIN V REGION S43 | polymer | 244 | 25742.3 | 1 | UniProt (P01801) UniProt (P01727) Pfam (PF07686) In PDB | MUS MUSCULUS (HOUSE MOUSE) | SCFV-SM3 |
2 | P | ANTIGEN TN, THR IS COVALENTLY BOUND TO GALNAC | polymer | 6 | 656.7 | 1 | HOMO SAPIENS | ||
3 | H | 1,2-ETHANEDIOL | non-polymer | 62.1 | 6 | Chemie (EDO) | |||
4 | P | 2-acetamido-2-deoxy-alpha-D-galactopyranose | non-polymer | 221.2 | 1 | Chemie (A2G) | |||
5 | water | water | 18.0 | 188 | Chemie (HOH) |
Sequence modifications
H: 6 - 113 (UniProt: P01801)
H: 1002 - 1107 (UniProt: P01727)
PDB | External Database | Details |
---|---|---|
Gln 1 | - | cloning artifact |
Val 2 | - | cloning artifact |
Gln 3 | - | cloning artifact |
Leu 4 | - | cloning artifact |
Gln 5 | - | cloning artifact |
Gly 94 | - | insertion |
Val 95 | - | insertion |
Gly 96 | - | insertion |
Gln 97 | - | insertion |
- | Thr 100 | deletion |
- | Gly 101 | deletion |
Thr 108 | Leu 110 | conflict |
Ser 114 | - | linker |
Ser 115 | - | linker |
Gly 116 | - | linker |
Gly 117 | - | linker |
Gly 118 | - | linker |
Gly 119 | - | linker |
Ser 120 | - | linker |
Gly 121 | - | linker |
Gly 122 | - | linker |
Gly 123 | - | linker |
Gly 124 | - | linker |
Gly 125 | - | linker |
Ser 126 | - | linker |
Ser 127 | - | linker |
Gly 128 | - | linker |
Ser 129 | - | linker |
Ser 130 | - | linker |
PDB | External Database | Details |
---|---|---|
Asp 1002 | Gln 20 | conflict |
Ile 1003 | Ala 21 | conflict |
Ala 1078 | Thr 98 | conflict |
Ile 1085 | Met 106 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 2 |
Total formula weight | 26399.0 | |
Non-Polymers* | Number of molecules | 7 |
Total formula weight | 593.6 | |
All* | Total formula weight | 26992.7 |