4ZER
Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | 1A, 2A | 23s ribosomal RNA | polymer | 2915 | 948007.6 | 2 | GenBank (55771382) | Thermus thermophilus HB8 | |
2 | 1B, 2B | 5s ribosomal RNA | polymer | 120 | 38882.2 | 2 | GenBank (48271) | Thermus thermophilus HB8 | |
3 | 1D, 2D | 50S ribosomal protein L2 | polymer | 275 | 30401.4 | 2 | UniProt (Q72I07) Pfam (PF00181) Pfam (PF03947) UniProt (by SIFTS) (P60405) In PDB | Thermus thermophilus HB8 | |
4 | 1E, 2E | 50S ribosomal protein L3 | polymer | 204 | 22250.0 | 2 | UniProt (Q72I04) Pfam (PF00297) UniProt (by SIFTS) (Q5SHN8) In PDB | Thermus thermophilus HB8 | |
5 | 1F, 2F | 50S ribosomal protein L4 | polymer | 203 | 22512.0 | 2 | UniProt (Q5SHN9) Pfam (PF00573) In PDB | Thermus thermophilus HB8 | L1e |
6 | 1G, 2G | 50S ribosomal protein L5 | polymer | 181 | 20930.4 | 2 | UniProt (Q5SHQ0) Pfam (PF00281) Pfam (PF00673) In PDB | Thermus thermophilus HB8 | |
7 | 1H, 2H | 50S ribosomal protein L6 | polymer | 174 | 18980.2 | 2 | UniProt (Q72I19) Pfam (PF00347) UniProt (by SIFTS) (P0DOY8) In PDB | Thermus thermophilus HB8 | |
8 | 1I, 2I | 50S ribosomal protein L9 | polymer | 147 | 16293.1 | 2 | UniProt (Q5SLQ1) Pfam (PF01281) Pfam (PF03948) In PDB | Thermus thermophilus HB8 | |
9 | 1N, 2N | 50S ribosomal protein L13 | polymer | 140 | 15927.9 | 2 | UniProt (Q72IN1) Pfam (PF00572) UniProt (by SIFTS) (P60488) In PDB | Thermus thermophilus HB8 | |
10 | 1O, 2O | 50S ribosomal protein L14 | polymer | 122 | 13323.6 | 2 | UniProt (Q5SHP8) Pfam (PF00238) In PDB | Thermus thermophilus HB8 | |
11 | 1P, 2P | 50S ribosomal protein L15 | polymer | 149 | 16248.1 | 2 | UniProt (Q72I23) Pfam (PF00828) UniProt (by SIFTS) (Q5SHQ7) In PDB | Thermus thermophilus HB8 | |
12 | 1Q, 2Q | 50S ribosomal protein L16 | polymer | 141 | 15993.9 | 2 | UniProt (P60489) Pfam (PF00252) In PDB | Thermus thermophilus HB8 | |
13 | 1R, 2R | 50S ribosomal protein L17 | polymer | 118 | 13750.1 | 2 | UniProt (Q72I33) Pfam (PF01196) UniProt (by SIFTS) (Q9Z9H5) In PDB | Thermus thermophilus HB8 | |
14 | 1S, 2S | 50S ribosomal protein L18 | polymer | 110 | 12437.6 | 2 | UniProt (Q72I20) Pfam (PF00861) UniProt (by SIFTS) (Q5SHQ4) In PDB | Thermus thermophilus HB8 | |
15 | 1T, 2T | 50S ribosomal protein L19 | polymer | 131 | 15503.0 | 2 | UniProt (P60490) Pfam (PF01245) In PDB | Thermus thermophilus HB8 | |
16 | 1U, 2U | 50S ribosomal protein L20 | polymer | 116 | 13591.0 | 2 | UniProt (Q72L76) Pfam (PF00453) UniProt (by SIFTS) (P60491) In PDB | Thermus thermophilus HB8 | |
17 | 1V, 2V | 50S ribosomal protein L21 | polymer | 101 | 11069.2 | 2 | UniProt (Q72HR2) Pfam (PF00829) UniProt (by SIFTS) (P60492) In PDB | Thermus thermophilus HB8 | |
18 | 1W, 2W | 50S ribosomal protein L22 | polymer | 112 | 12678.9 | 2 | UniProt (Q72I09) Pfam (PF00237) UniProt (by SIFTS) (Q5SHP3) In PDB | Thermus thermophilus HB8 | |
19 | 1X, 2X | 50S ribosomal protein L23 | polymer | 95 | 10646.6 | 2 | UniProt (Q72I06) Pfam (PF00276) UniProt (by SIFTS) (Q5SHP0) In PDB | Thermus thermophilus HB8 | |
20 | 1Y, 2Y | 50S ribosomal protein L24 | polymer | 107 | 11726.3 | 2 | UniProt (Q72I15) Pfam (PF00467) Pfam (PF17136) UniProt (by SIFTS) (Q5SHP9) In PDB | Thermus thermophilus HB8 | |
21 | 1Z, 2Z | 50S ribosomal protein L25 | polymer | 203 | 22851.2 | 2 | UniProt (Q72IA7) Pfam (PF01386) Pfam (PF14693) UniProt (by SIFTS) (Q5SHZ1) In PDB | Thermus thermophilus HB8 | General stress protein CTC |
22 | 10, 20 | 50S ribosomal protein L27 | polymer | 77 | 8689.0 | 2 | UniProt (P60493) Pfam (PF01016) In PDB | Thermus thermophilus HB8 | |
23 | 11, 21 | 50S ribosomal protein L28 | polymer | 97 | 10873.0 | 2 | UniProt (P60494) Pfam (PF00830) In PDB | Thermus thermophilus HB8 | |
24 | 12, 22 | 50S ribosomal protein L29 | polymer | 70 | 8485.1 | 2 | UniProt (Q72I12) Pfam (PF00831) UniProt (by SIFTS) (Q5SHP6) In PDB | Thermus thermophilus HB8 | |
25 | 13, 23 | 50S ribosomal protein L30 | polymer | 59 | 6667.9 | 2 | UniProt (Q72I22) Pfam (PF00327) UniProt (by SIFTS) (Q5SHQ6) In PDB | Thermus thermophilus HB8 | |
26 | 14, 24 | 50S ribosomal protein L31 | polymer | 69 | 8086.3 | 2 | UniProt (Q72JR0) Pfam (PF01197) UniProt (by SIFTS) (Q5SJE1) In PDB | Thermus thermophilus HB8 | |
27 | 15, 25 | 50S ribosomal protein L32 | polymer | 59 | 6590.9 | 2 | UniProt (P80339) Pfam (PF01783) In PDB | Thermus thermophilus HB8 | |
28 | 16, 26 | 50S ribosomal protein L33 | polymer | 53 | 6501.7 | 2 | UniProt (Q72GW3) Pfam (PF00471) UniProt (by SIFTS) (P35871) In PDB | Thermus thermophilus HB8 | |
29 | 17, 27 | 50S ribosomal protein L34 | polymer | 48 | 5975.3 | 2 | UniProt (P80340) Pfam (PF00468) In PDB | Thermus thermophilus HB8 | |
30 | 18, 28 | 50S ribosomal protein L35 | polymer | 64 | 7375.0 | 2 | UniProt (Q72L77) Pfam (PF01632) UniProt (by SIFTS) (Q5SKU1) In PDB | Thermus thermophilus HB8 | |
31 | 19, 29 | 50S ribosomal protein L36 | polymer | 37 | 4435.4 | 2 | UniProt (Q72I28) Pfam (PF00444) UniProt (by SIFTS) (Q5SHR2) In PDB | Thermus thermophilus HB8 | |
32 | 1a, 2a | 16s ribosomal RNA | polymer | 1521 | 493863.6 | 2 | GenBank (155076) | Thermus thermophilus HB8 | |
33 | 1b, 2b | 30S ribosomal protein S2 | polymer | 231 | 26646.9 | 2 | UniProt (P62662) Pfam (PF00318) UniProt (by SIFTS) (P80371) In PDB | Thermus thermophilus HB8 | |
34 | 1c, 2c | 30S ribosomal protein S3 | polymer | 206 | 22862.4 | 2 | UniProt (P62663) Pfam (PF07650) Pfam (PF00189) UniProt (by SIFTS) (P80372) In PDB | Thermus thermophilus HB8 | |
35 | 1d, 2d | 30S ribosomal protein S4 | polymer | 208 | 24242.3 | 2 | UniProt (P62664) Pfam (PF00163) Pfam (PF01479) UniProt (by SIFTS) (P80373) In PDB | Thermus thermophilus HB8 | |
36 | 1e, 2e | 30S ribosomal protein S5 | polymer | 148 | 16144.8 | 2 | UniProt (P62665) Pfam (PF00333) Pfam (PF03719) UniProt (by SIFTS) (Q5SHQ5) In PDB | Thermus thermophilus HB8 | |
37 | 1f, 2f | 30S ribosomal protein S6 | polymer | 100 | 11917.7 | 2 | UniProt (P62666) Pfam (PF01250) UniProt (by SIFTS) (Q5SLP8) In PDB | Thermus thermophilus HB8 | |
38 | 1g, 2g | 30S ribosomal protein S7 | polymer | 155 | 17919.8 | 2 | UniProt (P62667) Pfam (PF00177) UniProt (by SIFTS) (P17291) In PDB | Thermus thermophilus HB8 | |
39 | 1h, 2h | 30S ribosomal protein S8 | polymer | 137 | 15737.4 | 2 | UniProt (P62668) Pfam (PF00410) UniProt (by SIFTS) (P0DOY9) In PDB | Thermus thermophilus HB8 | |
40 | 1i, 2i | 30S ribosomal protein S9 | polymer | 127 | 14279.4 | 2 | UniProt (P80374) Pfam (PF00380) In PDB | Thermus thermophilus HB8 | |
41 | 1j, 2j | 30S ribosomal protein S10 | polymer | 97 | 11170.0 | 2 | UniProt (P62653) Pfam (PF00338) UniProt (by SIFTS) (Q5SHN7) In PDB | Thermus thermophilus HB8 | |
42 | 1k, 2k | 30S ribosomal protein S11 | polymer | 114 | 12032.7 | 2 | UniProt (P62654) Pfam (PF00411) UniProt (by SIFTS) (P80376) In PDB | Thermus thermophilus HB8 | |
43 | 1l, 2l | 30S ribosomal protein S12 | polymer | 122 | 13650.2 | 2 | UniProt (P61941) Pfam (PF00164) UniProt (by SIFTS) (Q5SHN3) In PDB | Thermus thermophilus HB8 | |
44 | 1m, 2m | 30S ribosomal protein S13 | polymer | 116 | 13237.4 | 2 | UniProt (P62655) Pfam (PF00416) UniProt (by SIFTS) (P80377) In PDB | Thermus thermophilus HB8 | |
45 | 1n, 2n | 30S ribosomal protein S14 type Z | polymer | 60 | 7027.5 | 2 | UniProt (P62656) Pfam (PF00253) UniProt (by SIFTS) (P0DOY6) In PDB | Thermus thermophilus HB8 | |
46 | 1o, 2o | 30S ribosomal protein S15 | polymer | 88 | 10447.2 | 2 | UniProt (P62657) Pfam (PF00312) UniProt (by SIFTS) (Q5SJ76) In PDB | Thermus thermophilus HB8 | |
47 | 1p, 2p | 30S ribosomal protein S16 | polymer | 82 | 9795.4 | 2 | UniProt (P62238) Pfam (PF00886) UniProt (by SIFTS) (Q5SJH3) In PDB | Thermus thermophilus HB8 | |
48 | 1q, 2q | 30S ribosomal protein S17 | polymer | 99 | 11722.9 | 2 | UniProt (Q5SHP7) In PDB | Thermus thermophilus HB8 | |
49 | 1r, 2r | 30S ribosomal protein S18 | polymer | 68 | 7897.5 | 2 | UniProt (P62659) Pfam (PF01084) UniProt (by SIFTS) (Q5SLQ0) In PDB | Thermus thermophilus HB8 | |
50 | 1s, 2s | 30S ribosomal protein S19 | polymer | 83 | 9456.0 | 2 | UniProt (P62660) Pfam (PF00203) UniProt (by SIFTS) (Q5SHP2) In PDB | Thermus thermophilus HB8 | |
51 | 1t, 2t | 30S ribosomal protein S20 | polymer | 98 | 10876.1 | 2 | UniProt (P80380) Pfam (PF01649) In PDB | Thermus thermophilus HB8 | |
52 | 1u, 2u | 30S ribosomal protein Thx | polymer | 23 | 2831.3 | 2 | UniProt (Q5SIH3) Pfam (PF17070) In PDB | Thermus thermophilus HB8 | S31 |
53 | 1x, 2x | tRNA met | polymer | 76 | 24541.7 | 2 | GenBank (745369752) | Escherichia coli K-12 | |
54 | 1y, 2y | Onc112 | polymer | 19 | 2396.8 | 2 | Oncopeltus fasciatus | ||
55 | A, B | mRNA | polymer | 27 | 8754.2 | 2 | Thermus thermophilus HB8 | ||
56 | 1A, 1a, 2A, 1e, 2D... | MAGNESIUM ION | non-polymer | 24.3 | 2302 | Chemie (MG) | Thermus thermophilus HB8 | ||
57 | 1A, 2A | UNKNOWN ATOM OR ION | non-polymer | 351.6 | 2 | Chemie (UNX) | |||
58 | 1A, 1a | (4S)-2-METHYL-2,4-PENTANEDIOL | non-polymer | 118.2 | 2 | Chemie (MPD) | |||
59 | 1B | ARGININE | non-polymer | 175.2 | 1 | Chemie (ARG) | |||
60 | 2n, 14, 15, 1n, 2Y... | ZINC ION | non-polymer | 65.4 | 12 | Chemie (ZN) | |||
61 | 1d, 2d | IRON/SULFUR CLUSTER | non-polymer | 351.6 | 2 | Chemie (SF4) | |||
62 | 2A | POTASSIUM ION | non-polymer | 39.1 | 1 | Chemie (K) | |||
63 | water | water | 18.0 | 3865 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 110 |
Total formula weight | 4354269.6 | |
Non-Polymers* | Number of molecules | 2322 |
Total formula weight | 58592.2 | |
All* | Total formula weight | 4412861.8 |