4YIG
vaccinia virus D4/A20(1-50) in complex with dsDNA containing an abasic site and free uracyl
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, E, I | Uracil-DNA glycosylase | polymer | 232 | 26729.5 | 3 | UniProt (P20536) In PDB | Vaccinia virus (strain Copenhagen) (VACV) | UDG |
2 | B, F, J | DNA polymerase processivity factor component A20 | polymer | 52 | 5777.6 | 3 | UniProt (P20995) In PDB | Vaccinia virus | |
3 | C, G, K | DNA (5'-D(*CP*TP*GP*TP*(ORP)P*AP*TP*CP*TP*T)-3') | polymer | 10 | 2892.9 | 3 | synthetic construct | ||
4 | D, H, L | DNA (5'-D(*AP*AP*GP*AP*TP*AP*AP*CP*AP*G)-3') | polymer | 10 | 3086.1 | 3 | synthetic construct | ||
5 | A, E, I | URACIL | non-polymer | 112.1 | 3 | Chemie (URA) | |||
6 | water | water | 18.0 | 54 | Chemie (HOH) |
Sequence modifications
A, E, I: 1 - 218 (UniProt: P20536)
B, F, J: 3 - 50 (UniProt: P20995)
PDB | External Database | Details |
---|---|---|
Met -13 | - | initiating methionine |
Gly -12 | - | expression tag |
Ser -11 | - | expression tag |
Ser -10 | - | expression tag |
His -9 | - | expression tag |
His -8 | - | expression tag |
His -7 | - | expression tag |
His -6 | - | expression tag |
His -5 | - | expression tag |
His -4 | - | expression tag |
Ser -3 | - | expression tag |
Gln -2 | - | expression tag |
Asp -1 | - | expression tag |
Pro 0 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Gly -1 | - | expression tag |
Ala 0 | - | expression tag |
Met 1 | - | expression tag |
Ala 2 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 12 |
Total formula weight | 115458.0 | |
Non-Polymers* | Number of molecules | 3 |
Total formula weight | 336.3 | |
All* | Total formula weight | 115794.2 |