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4XJ4

Crystal structure of Vibrio cholerae DncV 3'-deoxy ATP bound form

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Cyclic AMP-GMP synthasepolymer38944313.61UniProt (Q9KVG7)
Pfam (PF21654)
Pfam (PF21713)
Vibrio cholerae O1 biovar El Tor str. N16961c-AMP-GMP synthase,Dinucleotide cyclase DncV
2B, C, D, E, F
(A)
1,2-ETHANEDIOLnon-polymer62.15Chemie (EDO)
3G, H
(A)
3'-DEOXYADENOSINE-5'-TRIPHOSPHATEnon-polymer491.22Chemie (3AT)
4I
(A)
MAGNESIUM IONnon-polymer24.31Chemie (MG)
5J
(A)
waterwater18.0280Chemie (HOH)
Sequence modifications
A: 1 - 215 (UniProt: Q9KVG7)
A: 242 - 412 (UniProt: Q9KVG7)
PDBExternal DatabaseDetails
Gly 239-linker
Ser 240-linker
Gly 241-linker
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight44313.6
Non-Polymers*Number of molecules8
Total formula weight1317.0
All*Total formula weight45630.6
*Water molecules are not included.

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PDB entries from 2025-06-18

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