4X14
JC Mad-1 polyomavirus VP1 in complex with GM1 oligosaccharide
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E (A, B, C, D, E) | Major capsid protein VP1 | polymer | 272 | 30075.9 | 5 | UniProt (P03089) Pfam (PF00718) | JC polyomavirus (JCPyV) | Major structural protein VP1 |
| 2 | F (F) | beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-4)-[N-acetyl-alpha-neuraminic acid-(2-3)]beta-D-galactopyranose | branched | 836.7 | 1 | In PDB GlyTouCan (G50886AE) | |||
| 3 | G, H (G, H) | beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-4)-[N-acetyl-alpha-neuraminic acid-(2-3)]beta-D-galactopyranose-(1-4)-beta-D-glucopyranose | branched | 998.9 | 2 | In PDB GlyTouCan (G48558GR) | |||
| 4 | DA, I, P, U, Z (E, A, B, C, D) | GLYCEROL | non-polymer | 92.1 | 5 | Chemie (GOL) | |||
| 5 | AA, BA, EA, FA, GA... (D, E, A, B, C) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 15 | Chemie (EDO) | |||
| 6 | CA, N, O, T, Y (D, A, B, C) | POTASSIUM ION | non-polymer | 39.1 | 5 | Chemie (K) | |||
| 7 | HA, IA, JA, KA, LA (A, B, C, D, E) | water | water | 18.0 | 669 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E: 22 - 289 (UniProt: P03089)
| PDB | External Database | Details |
|---|---|---|
| Gly 18 | - | expression tag |
| Ser 19 | - | expression tag |
| His 20 | - | expression tag |
| Met 21 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 5 |
| Total formula weight | 150379.3 | |
| Branched | Number of molecules | 3 |
| Total formula weight | 2834.5 | |
| Non-Polymers* | Number of molecules | 25 |
| Total formula weight | 1587.0 | |
| All* | Total formula weight | 154800.8 |
