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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4WT8

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A2mRNApolymer92840.81Thermus thermophilus
2AA, BA30S ribosomal protein S2polymer23426987.32UniProt (P80371)
Pfam (PF00318)
In PDB		Thermus thermophilus
3AC30S ribosomal protein S3polymer23826622.01UniProt (P80372)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Thermus thermophilus
4AD, BD30S ribosomal protein S4polymer20824242.32UniProt (P80373)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Thermus thermophilus
5AE, BE30S ribosomal protein S5polymer15016331.12UniProt (Q5SHQ5)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Thermus thermophilus
6AF, BF30S ribosomal protein S6polymer10111988.82UniProt (Q5SLP8)
Pfam (PF01250)
In PDB		Thermus thermophilusTS9
7AG, BG30S ribosomal protein S7polymer15517919.82UniProt (P17291)
Pfam (PF00177)
In PDB		Thermus thermophilus
8AH, BH30S ribosomal protein S8polymer13815868.62UniProt (Q5SHQ2)
Pfam (PF00410)
UniProt (by SIFTS) (P0DOY9)
In PDB		Thermus thermophilus
9AI, BI30S ribosomal protein S9polymer12714298.52UniProt (P62669)
UniProt (P80374)
Pfam (PF00380)
In PDB		Thermus thermophilus
10AJ, BJ30S ribosomal protein S10polymer9811299.22UniProt (Q5SHN7)
Pfam (PF00338)
In PDB		Thermus thermophilus
11AK, BK30S ribosomal protein S11polymer11912606.42UniProt (P80376)
Pfam (PF00411)
In PDB		Thermus thermophilus
12AL, BL30S ribosomal protein S12polymer12413804.32UniProt (Q5SHN3)
Pfam (PF00164)
In PDB		Thermus thermophilus
13AM, BM30S ribosomal protein S13polymer12414078.52UniProt (P80377)
Pfam (PF00416)
In PDB		Thermus thermophilus
14AN, BN30S ribosomal protein S14 type Zpolymer607027.52UniProt (Q5SHQ1)
Pfam (PF00253)
UniProt (by SIFTS) (P0DOY6)
In PDB		Thermus thermophilus
15AO, BO30S ribosomal protein S15polymer8810447.22UniProt (Q5SJ76)
Pfam (PF00312)
In PDB		Thermus thermophilus
16AP, BP30S ribosomal protein S16polymer839924.52UniProt (Q5SJH3)
Pfam (PF00886)
In PDB		Thermus thermophilus
17AR, BR30S ribosomal protein S17polymer9911722.92UniProt (Q5SHP7)
Pfam (PF00366)
UniProt (by SIFTS) (P0DOY7)
In PDB		Thermus thermophilus
18AS, BS30S ribosomal protein S18polymer708155.82UniProt (Q5SLQ0)
Pfam (PF01084)
In PDB		Thermus thermophilus
19AT, BT30S ribosomal protein S19polymer788949.42UniProt (Q5SHP2)
Pfam (PF00203)
In PDB		Thermus thermophilus
20AU, BU30S ribosomal protein S20polymer9910921.12UniProt (P80380)
Pfam (PF01649)
In PDB		Thermus thermophilus
21AW, BW30S ribosomal protein Thxpolymer242960.52UniProt (Q5SIH3)
Pfam (PF17070)
In PDB		Thermus thermophilusS31
22Ab, BbRNA (1504-MER)polymer1504488391.22GenBank (55771382)
GenBank (155076)		Thermus thermophilus
23B2mRNApolymer103170.01Thermus thermophilus
24BC30S ribosomal protein S3polymer20622862.41UniProt (P80372)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Thermus thermophilus
25C2, C3, D3A site tNA, E site tNApolymer7624485.53Thermus thermophilus
26C4P site trNApolymer7724802.81Thermus thermophilus
27CA50S ribosomal protein L1polymer20619880.51UniProt (Q5SLP7)
Pfam (PF00687)
In PDB		Thermus thermophilus
28CB, DB50S ribosomal protein L2polymer27129828.62UniProt (P60405)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Thermus thermophilus
29CC, DC50S ribosomal protein L3polymer20422250.02UniProt (Q5SHN8)
Pfam (PF00297)
In PDB		Thermus thermophilus
30CD, DD50S ribosomal protein L4polymer20723014.72UniProt (Q5SHN9)
Pfam (PF00573)
In PDB		Thermus thermophilusL1e
31CE, DE50S ribosomal protein L5polymer18120930.42UniProt (Q5SHQ0)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Thermus thermophilus
32CF, DF50S ribosomal protein L6polymer15917363.12UniProt (Q5SHQ3)
Pfam (PF00347)
UniProt (by SIFTS) (P0DOY8)
In PDB		Thermus thermophilus
33CI, DI50S ribosomal protein L9polymer14516093.92UniProt (Q5SLQ1)
Pfam (PF01281)
Pfam (PF03948)
In PDB		Thermus thermophilus
34CJ, DJribosomal L10 proteinpolymer13011081.72Thermus thermophilus
35CM, DM50S ribosomal protein L13polymer13815699.72UniProt (P60488)
Pfam (PF00572)
In PDB		Thermus thermophilus
36CN, DN50S ribosomal protein L14polymer12213323.62UniProt (Q5SHP8)
Pfam (PF00238)
In PDB		Thermus thermophilus
37CO, DO50S ribosomal protein L15polymer14615858.52UniProt (Q5SHQ7)
Pfam (PF00828)
In PDB		Thermus thermophilus
38CP, DP50S ribosomal protein L16polymer14115993.92UniProt (P60489)
Pfam (PF00252)
In PDB		Thermus thermophilus
39CQ, DQ50S ribosomal protein L17polymer11713619.02UniProt (Q9Z9H5)
UniProt (Q72I33)
Pfam (PF01196)
In PDB		Thermus thermophilus
40CR, DR50S ribosomal protein L18polymer9810941.92UniProt (Q5SHQ4)
Pfam (PF00861)
In PDB		Thermus thermophilusTL24
41CS, DS50S ribosomal protein L19polymer13716218.82UniProt (P60490)
Pfam (PF01245)
In PDB		Thermus thermophilus
42CT, DT50S ribosomal protein L20polymer11713572.02UniProt (P60491)
Pfam (PF00453)
In PDB		Thermus thermophilus
43CU, DU50S ribosomal protein L21polymer10111069.22UniProt (P60492)
Pfam (PF00829)
In PDB		Thermus thermophilus
44CW50S ribosomal protein L22polymer11312808.11UniProt (Q5SHP3)
Pfam (PF00237)
In PDB		Thermus thermophilus
45CX, DX50S ribosomal protein L23polymer9210273.12UniProt (Q5SHP0)
Pfam (PF00276)
In PDB		Thermus thermophilus
46CY, DY50S ribosomal protein L24polymer10011078.52UniProt (Q5SHP9)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Thermus thermophilus
47CZ, DZ50S ribosomal protein L25polymer17619892.92UniProt (Q5SHZ1)
Pfam (PF01386)
Pfam (PF14693)
In PDB		Thermus thermophilusTL5
48Ca, Da50S ribosomal protein L27polymer849397.92UniProt (P60493)
Pfam (PF01016)
In PDB		Thermus thermophilus
49CH, DH50S ribosomal protein L28polymer9310458.42UniProt (Q72G84)
UniProt (P60494)
Pfam (PF00830)
In PDB		Thermus thermophilus
50CK, DK50S ribosomal protein L29polymer718539.12UniProt (Q5SHP6)
Pfam (PF00831)
In PDB		Thermus thermophilus
51CL, DL50S ribosomal protein L30polymer596670.02UniProt (Q5SHQ6)
Pfam (PF00327)
In PDB		Thermus thermophilus
52C5, D550S ribosomal protein L31polymer303278.92UniProt (Q5SJE1)
Pfam (PF01197)
In PDB		Thermus thermophilus
53C6, D650S ribosomal protein L32polymer596590.92UniProt (P80339)
Pfam (PF01783)
In PDB		Thermus thermophilus
54C7, D750S ribosomal protein L33polymer445473.42UniProt (P35871)
Pfam (PF00471)
In PDB		Thermus thermophilus
55C8, D850S ribosomal protein L34polymer485975.32UniProt (P80340)
Pfam (PF00468)
In PDB		Thermus thermophilus
56C9, D950S ribosomal protein L35polymer637245.92UniProt (Q5SKU1)
Pfam (PF01632)
In PDB		Thermus thermophilus
57C0, D050S ribosomal protein L36polymer364304.22UniProt (Q5SHR2)
Pfam (PF00444)
In PDB		Thermus thermophilusRibosomal protein B
58C1, D123S rRNA (2899-MER)polymer2899942978.42Thermus thermophilus
59Cs, Ds5S rRNA (119-MER)polymer11938553.02GenBank (55771382)Thermus thermophilus
60D2tRNA (5'-D(*AP*UP*CP*CP*CP*CP*GP*UP*GP*UP*CP*CP*UP*UP*GP*GP*UP*UP*CP*G)-3')polymer206289.71Thermus thermophilus
61D4tRNA (76-MER)polymer7624497.61Thermus thermophilus
62DA50S ribosomal protein L1polymer20619866.51UniProt (Q5SLP7)
Pfam (PF00687)
In PDB		Thermus thermophilus
63DW50S ribosomal protein L22polymer11312750.01UniProt (Q5SHP3)
Pfam (PF00237)
In PDB		Thermus thermophilus
64DVDNA (55-MER)polymer5517821.71Thermus thermophilus
65Ab, BbPAROMOMYCINnon-polymer615.62Chemie (PAR)
66C1, D1Bactobolin Anon-polymer381.32Chemie (3V6)
67C1, D1MAGNESIUM IONnon-polymer24.32Chemie (MG)
Sequence modifications
AI, BI: 2 - 128 (UniProt: P80374)
PDBExternal DatabaseDetails
Arg 58His 58conflict
Ab, Bb: 6 - 1509 (GenBank: 55771382)
CA: 18 - 110 (UniProt: Q5SLP7)
PDBExternal DatabaseDetails
Ala 106Gly 107conflict
CA: 119 - 233 (PDB: 4WT8)
CQ, DQ: 2 - 118 (UniProt: Q9Z9H5)
CT, DT: 2 - 118 (UniProt: P60491)
PDBExternal DatabaseDetails
Ala 32Phe 32conflict
CH, DH: 3 - 95 (UniProt: Q72G84)
Cs, Ds: 1 - 119 (PDB: 4WT8)
DA: 18 - 110 (UniProt: Q5SLP7)
DA: 119 - 233 (PDB: 4WT8)
DW: 1 - 112 (UniProt: Q5SHP3)
PDBExternal DatabaseDetails
Ala 113-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains117
Total formula weight4458654.7
Non-Polymers*Number of molecules6
Total formula weight2042.4
All*Total formula weight4460697.0
*Water molecules are not included.

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PDB entries from 2024-04-17

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