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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4WT8

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A2)		mRNApolymer92840.81Thermus thermophilus
2B, Y
(AA, BA)		30S ribosomal protein S2polymer23426987.32UniProt (P80371)
Pfam (PF00318)		Thermus thermophilus
3C
(AC)		30S ribosomal protein S3polymer23826622.01UniProt (P80372)
Pfam (PF07650)
Pfam (PF00189)		Thermus thermophilus
4AA, D
(AD, BD)		30S ribosomal protein S4polymer20824242.32UniProt (P80373)
Pfam (PF00163)
Pfam (PF01479)		Thermus thermophilus
5BA, E
(AE, BE)		30S ribosomal protein S5polymer15016331.12UniProt (Q5SHQ5)
Pfam (PF00333)
Pfam (PF03719)		Thermus thermophilus
6CA, F
(AF, BF)		30S ribosomal protein S6polymer10111988.82UniProt (Q5SLP8)
Pfam (PF01250)		Thermus thermophilusTS9
7DA, G
(AG, BG)		30S ribosomal protein S7polymer15517919.82UniProt (P17291)
Pfam (PF00177)		Thermus thermophilus
8EA, H
(AH, BH)		30S ribosomal protein S8polymer13815868.62UniProt (Q5SHQ2)
Pfam (PF00410)
UniProt (by SIFTS) (P0DOY9)		Thermus thermophilus
9FA, I
(AI, BI)		30S ribosomal protein S9polymer12714298.52UniProt (P62669)
UniProt (P80374)
Pfam (PF00380)		Thermus thermophilus
10GA, J
(AJ, BJ)		30S ribosomal protein S10polymer9811299.22UniProt (Q5SHN7)
Pfam (PF00338)		Thermus thermophilus
11HA, K
(AK, BK)		30S ribosomal protein S11polymer11912606.42UniProt (P80376)
Pfam (PF00411)		Thermus thermophilus
12IA, L
(AL, BL)		30S ribosomal protein S12polymer12413804.32UniProt (Q5SHN3)
Pfam (PF00164)		Thermus thermophilus
13JA, M
(AM, BM)		30S ribosomal protein S13polymer12414078.52UniProt (P80377)
Pfam (PF00416)		Thermus thermophilus
14KA, N
(AN, BN)		30S ribosomal protein S14 type Zpolymer607027.52UniProt (Q5SHQ1)
Pfam (PF00253)
UniProt (by SIFTS) (P0DOY6)		Thermus thermophilus
15LA, O
(AO, BO)		30S ribosomal protein S15polymer8810447.22UniProt (Q5SJ76)
Pfam (PF00312)		Thermus thermophilus
16MA, P
(AP, BP)		30S ribosomal protein S16polymer839924.52UniProt (Q5SJH3)
Pfam (PF00886)		Thermus thermophilus
17NA, Q
(AR, BR)		30S ribosomal protein S17polymer9911722.92UniProt (Q5SHP7)
Pfam (PF00366)
UniProt (by SIFTS) (P0DOY7)		Thermus thermophilus
18OA, R
(AS, BS)		30S ribosomal protein S18polymer708155.82UniProt (Q5SLQ0)
Pfam (PF01084)		Thermus thermophilus
19PA, S
(AT, BT)		30S ribosomal protein S19polymer788949.42UniProt (Q5SHP2)
Pfam (PF00203)		Thermus thermophilus
20QA, T
(AU, BU)		30S ribosomal protein S20polymer9910921.12UniProt (P80380)
Pfam (PF01649)		Thermus thermophilus
21RA, U
(AW, BW)		30S ribosomal protein Thxpolymer242960.52UniProt (Q5SIH3)
Pfam (PF17070)		Thermus thermophilusS31
22V, X
(Ab, Bb)		RNA (1504-MER)polymer1504488391.22GenBank (55771382)
GenBank (155076)		Thermus thermophilus
23W
(B2)		mRNApolymer103170.01Thermus thermophilus
24Z
(BC)		30S ribosomal protein S3polymer20622862.41UniProt (P80372)
Pfam (PF07650)
Pfam (PF00189)		Thermus thermophilus
25DC, SA, TA
(C2, C3, D3)		A site tNA, E site tNApolymer7624485.53Thermus thermophilus
26UA
(C4)		P site trNApolymer7724802.81Thermus thermophilus
27VA
(CA)		50S ribosomal protein L1polymer20619880.51UniProt (Q5SLP7)
Pfam (PF00687)		Thermus thermophilus
28GC, WA
(CB, DB)		50S ribosomal protein L2polymer27129828.62UniProt (P60405)
Pfam (PF00181)
Pfam (PF03947)		Thermus thermophilus
29HC, XA
(CC, DC)		50S ribosomal protein L3polymer20422250.02UniProt (Q5SHN8)
Pfam (PF00297)		Thermus thermophilus
30IC, YA
(CD, DD)		50S ribosomal protein L4polymer20723014.72UniProt (Q5SHN9)
Pfam (PF00573)		Thermus thermophilusL1e
31JC, ZA
(CE, DE)		50S ribosomal protein L5polymer18120930.42UniProt (Q5SHQ0)
Pfam (PF00281)
Pfam (PF00673)		Thermus thermophilus
32AB, KC
(CF, DF)		50S ribosomal protein L6polymer15917363.12UniProt (Q5SHQ3)
Pfam (PF00347)
UniProt (by SIFTS) (P0DOY8)		Thermus thermophilus
33BB, LC
(CI, DI)		50S ribosomal protein L9polymer14516093.92UniProt (Q5SLQ1)
Pfam (PF01281)
Pfam (PF03948)		Thermus thermophilus
34CB, MC
(CJ, DJ)		ribosomal L10 proteinpolymer13011081.72Thermus thermophilus
35DB, NC
(CM, DM)		50S ribosomal protein L13polymer13815699.72UniProt (P60488)
Pfam (PF00572)		Thermus thermophilus
36EB, OC
(CN, DN)		50S ribosomal protein L14polymer12213323.62UniProt (Q5SHP8)
Pfam (PF00238)		Thermus thermophilus
37FB, PC
(CO, DO)		50S ribosomal protein L15polymer14615858.52UniProt (Q5SHQ7)
Pfam (PF00828)		Thermus thermophilus
38GB, QC
(CP, DP)		50S ribosomal protein L16polymer14115993.92UniProt (P60489)
Pfam (PF00252)		Thermus thermophilus
39HB, RC
(CQ, DQ)		50S ribosomal protein L17polymer11713619.02UniProt (Q9Z9H5)
UniProt (Q72I33)
Pfam (PF01196)		Thermus thermophilus
40IB, SC
(CR, DR)		50S ribosomal protein L18polymer9810941.92UniProt (Q5SHQ4)
Pfam (PF00861)		Thermus thermophilusTL24
41JB, TC
(CS, DS)		50S ribosomal protein L19polymer13716218.82UniProt (P60490)
Pfam (PF01245)		Thermus thermophilus
42KB, UC
(CT, DT)		50S ribosomal protein L20polymer11713572.02UniProt (P60491)
Pfam (PF00453)		Thermus thermophilus
43LB, VC
(CU, DU)		50S ribosomal protein L21polymer10111069.22UniProt (P60492)
Pfam (PF00829)		Thermus thermophilus
44MB
(CW)		50S ribosomal protein L22polymer11312808.11UniProt (Q5SHP3)
Pfam (PF00237)		Thermus thermophilus
45NB, XC
(CX, DX)		50S ribosomal protein L23polymer9210273.12UniProt (Q5SHP0)
Pfam (PF00276)		Thermus thermophilus
46OB, YC
(CY, DY)		50S ribosomal protein L24polymer10011078.52UniProt (Q5SHP9)
Pfam (PF00467)
Pfam (PF17136)		Thermus thermophilus
47PB, ZC
(CZ, DZ)		50S ribosomal protein L25polymer17619892.92UniProt (Q5SHZ1)
Pfam (PF01386)
Pfam (PF14693)		Thermus thermophilusTL5
48AD, QB
(Ca, Da)		50S ribosomal protein L27polymer849397.92UniProt (P60493)
Pfam (PF01016)		Thermus thermophilus
49BD, RB
(CH, DH)		50S ribosomal protein L28polymer9310458.42UniProt (Q72G84)
UniProt (P60494)
Pfam (PF00830)		Thermus thermophilus
50CD, SB
(CK, DK)		50S ribosomal protein L29polymer718539.12UniProt (Q5SHP6)
Pfam (PF00831)		Thermus thermophilus
51DD, TB
(CL, DL)		50S ribosomal protein L30polymer596670.02UniProt (Q5SHQ6)
Pfam (PF00327)		Thermus thermophilus
52ED, UB
(C5, D5)		50S ribosomal protein L31polymer303278.92UniProt (Q5SJE1)
Pfam (PF01197)		Thermus thermophilus
53FD, VB
(C6, D6)		50S ribosomal protein L32polymer596590.92UniProt (P80339)
Pfam (PF01783)		Thermus thermophilus
54GD, WB
(C7, D7)		50S ribosomal protein L33polymer445473.42UniProt (P35871)
Pfam (PF00471)		Thermus thermophilus
55HD, XB
(C8, D8)		50S ribosomal protein L34polymer485975.32UniProt (P80340)
Pfam (PF00468)		Thermus thermophilus
56ID, YB
(C9, D9)		50S ribosomal protein L35polymer637245.92UniProt (Q5SKU1)
Pfam (PF01632)		Thermus thermophilus
57JD, ZB
(C0, D0)		50S ribosomal protein L36polymer364304.22UniProt (Q5SHR2)
Pfam (PF00444)		Thermus thermophilusRibosomal protein B
58AC, LD
(C1, D1)		23S rRNA (2899-MER)polymer2899942978.42Thermus thermophilus
59BC, KD
(Cs, Ds)		5S rRNA (119-MER)polymer11938553.02GenBank (55771382)Thermus thermophilus
60CC
(D2)		tRNA (5'-D(*AP*UP*CP*CP*CP*CP*GP*UP*GP*UP*CP*CP*UP*UP*GP*GP*UP*UP*CP*G)-3')polymer206289.71Thermus thermophilus
61EC
(D4)		tRNA (76-MER)polymer7624497.61Thermus thermophilus
62FC
(DA)		50S ribosomal protein L1polymer20619866.51UniProt (Q5SLP7)
Pfam (PF00687)		Thermus thermophilus
63WC
(DW)		50S ribosomal protein L22polymer11312750.01UniProt (Q5SHP3)
Pfam (PF00237)		Thermus thermophilus
64MD
(DV)		DNA (55-MER)polymer5517821.71Thermus thermophilus
65ND, OD
(Ab, Bb)		PAROMOMYCINnon-polymer615.62Chemie (PAR)
PubChem (16757804)
PubChem (16760604)
PubChem (17757254)
PubChem (20849281)
PubChem (71191297)
PubChem (165580)
PubChem (23789070)
PubChem (24096964)
PubChem (24867526)
PubChem (24867858)
PubChem (25104843)
PubChem (71188564)
PubChem (44120093)
PubChem (44251565)
PubChem (44186758)
PubChem (44663324)
PubChem (45358711)
PubChem (53486370)
PubChem (50989619)
PubChem (58160567)
PubChem (59361026)
PubChem (59800245)
PubChem (70793652)
PubChem (70793824)
PubChem (70795918)
PubChem (71068776)
PubChem (71072581)
PubChem (71072592)
PubChem (66932615)
PubChem (68032118)
PubChem (4689)
PubChem (14951)
PubChem (24176)
PubChem (6602492)
PubChem (6713982)
PubChem (70878598)
PubChem (71751432)
PubChem (91151908)
PubChem (73707499)
PubChem (9961808)
PubChem (3040200)
PubChem (94469269)
PubChem (94469270)
PubChem (94469271)
PubChem (91867972)
PubChem (98048758)
PubChem (98048760)
PubChem (91972181)
PubChem (94469268)
PubChem (98048759)
PubChem (98048761)
PubChem (5702262)
PubChem (121292209)
PubChem (6603975)
PubChem (101739930)
PubChem (6604293)
PubChem (122537356)
PubChem (6710686)
PubChem (124226135)
PubChem (124464537)
PubChem (9809147)
PubChem (125040357)
PubChem (125040359)
PubChem (125121197)
PubChem (129009945)
PubChem (131841783)
PubChem (132275078)
PubChem (118213779)
PubChem (118705495)
PubChem (122691713)
PubChem (124226132)
PubChem (124226133)
PubChem (124226134)
PubChem (124464538)
PubChem (12313981)
PubChem (124761786)
PubChem (124761787)
PubChem (124761788)
PubChem (124761789)
PubChem (125040358)
PubChem (125040360)
PubChem (125121198)
PubChem (129014632)
PubChem (129014634)
PubChem (129014635)
PubChem (129313238)
PubChem (152952600)
PubChem (134771120)
PubChem (162873319)
PubChem (137404838)
PubChem (161153506)
PubChem (163199098)
PubChem (164850471)
PubChem (172091638)
PubChem (173719997)
66PD, RD
(C1, D1)		Bactobolin Anon-polymer381.32Chemie (3V6)
PubChem (86580389)
PubChem (139033336)
67QD, SD
(C1, D1)		MAGNESIUM IONnon-polymer24.32Chemie (MG)
PubChem (888)
Sequence modifications
AI, BI: 2 - 128 (UniProt: P80374)
PDBExternal DatabaseDetails
Arg 58His 58conflict
Ab, Bb: 6 - 1509 (GenBank: 55771382)
CA: 18 - 110 (UniProt: Q5SLP7)
PDBExternal DatabaseDetails
Ala 106Gly 107conflict
CA: 119 - 233 (PDB: 4WT8)
CQ, DQ: 2 - 118 (UniProt: Q9Z9H5)
CT, DT: 2 - 118 (UniProt: P60491)
PDBExternal DatabaseDetails
Ala 32Phe 32conflict
CH, DH: 3 - 95 (UniProt: Q72G84)
Cs, Ds: 1 - 119 (PDB: 4WT8)
DA: 18 - 110 (UniProt: Q5SLP7)
DA: 119 - 233 (PDB: 4WT8)
DW: 1 - 112 (UniProt: Q5SHP3)
PDBExternal DatabaseDetails
Ala 113-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains117
Total formula weight4458654.7
Non-Polymers*Number of molecules6
Total formula weight2042.4
All*Total formula weight4460697.0
*Water molecules are not included.

251422

PDB entries from 2026-04-01

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