4W9M
AMPPNP bound Rad50 in complex with dsDNA
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, G (Y, Z) | DNA (5'-D(*GP*GP*TP*CP*GP*GP*TP*GP*AP*CP*CP*GP*AP*CP*C)-3') | polymer | 15 | 4611.0 | 2 | synthetic construct | ||
| 2 | B, H (A, G) | DNA (5'-D(*GP*GP*TP*CP*GP*GP*TP*CP*AP*CP*CP*GP*AP*CP*C)-3') | polymer | 15 | 4571.0 | 2 | synthetic construct | ||
| 3 | C, E, I, K (C, E, I, K) | Probable DNA double-strand break repair Rad50 ATPase,Probable DNA double-strand break repair Rad50 ATPase | polymer | 365 | 41073.9 | 4 | UniProt (Q9X1X1) Pfam (PF13476) Pfam (PF13558) | Thermotoga maritima MSB8 | |
| 4 | D, F, J, L (D, F, J, L) | Exonuclease, putative | polymer | 37 | 4650.4 | 4 | UniProt (Q9X1X0) Pfam (PF22161) | Thermotoga maritima MSB8 | Metallophosphatase |
| 5 | M, O, Q, S (C, E, I, K) | PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER | non-polymer | 506.2 | 4 | Chemie (ANP) | |||
| 6 | N, P, R, T (C, E, I, K) | MAGNESIUM ION | non-polymer | 24.3 | 4 | Chemie (MG) | |||
| 7 | AA, BA, CA, DA, U... (I, J, K, L, Y...) | water | water | 18.0 | 267 | Chemie (HOH) |
Sequence modifications
C, E, I, K: 1 - 188 (UniProt: Q9X1X1)
C, E, I, K: 687 - 852 (UniProt: Q9X1X1)
C, E, I, K: 687 - 852 (UniProt: Q9X1X1)
| PDB | External Database | Details |
|---|---|---|
| Ser 676 | - | linker |
| Ser 677 | - | linker |
| Gly 678 | - | linker |
| Gly 679 | - | linker |
| Ala 680 | - | linker |
| Gly 681 | - | linker |
| Gly 682 | - | linker |
| Ala 683 | - | linker |
| Gly 684 | - | linker |
| Gly 685 | - | linker |
| Ser 686 | - | linker |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 12 |
| Total formula weight | 201260.9 | |
| Non-Polymers* | Number of molecules | 8 |
| Total formula weight | 2122.0 | |
| All* | Total formula weight | 203382.9 |
