4V8I

Crystal structure of YfiA bound to the 70S ribosome.

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, BB (AA, CA)	16S Ribosomal RNA	polymer	1522	493958.3	2	GenBank (AP008226.1)	Thermus thermophilus
2	B, CB (AB, CB)	30S Ribosomal Protein S2	polymer	256	29317.7	2	UniProt (P80371) Pfam (PF00318)	Thermus thermophilus
3	C, DB (AC, CC)	30S Ribosomal Protein S3	polymer	239	26751.1	2	UniProt (P80372) Pfam (PF07650) Pfam (PF00189)	Thermus thermophilus
4	D, EB (AD, CD)	30S Ribosomal Protein S4	polymer	209	24373.4	2	UniProt (P80373) Pfam (PF01479) Pfam (PF00163)	Thermus thermophilus
5	E, FB (AE, CE)	30S Ribosomal Protein S5	polymer	162	17583.4	2	UniProt (Q5SHQ5) Pfam (PF00333) Pfam (PF03719)	Thermus thermophilus
6	F, GB (AF, CF)	30S Ribosomal Protein S6	polymer	101	11988.8	2	UniProt (Q5SLP8) Pfam (PF01250)	Thermus thermophilus
7	G, HB (AG, CG)	30S Ribosomal Protein S7	polymer	156	18051.0	2	UniProt (P17291) Pfam (PF00177)	Thermus thermophilus
8	H, IB (AH, CH)	30S Ribosomal Protein S8	polymer	138	15868.6	2	UniProt (Q5SHQ2)	Thermus thermophilus
9	I, JB (AI, CI)	30S Ribosomal Protein S9	polymer	128	14410.6	2	UniProt (P80374) Pfam (PF00380)	Thermus thermophilus
10	J, KB (AJ, CJ)	30S Ribosomal Protein S10	polymer	105	11955.0	2	UniProt (Q5SHN7) Pfam (PF00338)	Thermus thermophilus
11	K, LB (AK, CK)	30S Ribosomal Protein S11	polymer	129	13737.9	2	UniProt (P80376) Pfam (PF00411)	Thermus thermophilus
12	L, MB (AL, CL)	30S Ribosomal Protein S12	polymer	132	14637.4	2	UniProt (Q5SHN3) Pfam (PF00164)	Thermus thermophilus
13	M, NB (AM, CM)	30S Ribosomal Protein S13	polymer	126	14338.9	2	UniProt (P80377) Pfam (PF00416)	Thermus thermophilus
14	N, OB (AN, CN)	30S Ribosomal Protein S14	polymer	61	7158.7	2	UniProt (Q5SHQ1)	Thermus thermophilus
15	O, PB (AO, CO)	30S Ribosomal Protein S15	polymer	89	10578.4	2	UniProt (Q5SJ76) Pfam (PF00312)	Thermus thermophilus
16	P, QB (AP, CP)	30S Ribosomal Protein S16	polymer	88	10410.0	2	UniProt (Q5SJH3) Pfam (PF00886)	Thermus thermophilus
17	Q, RB (AQ, CQ)	30S Ribosomal Protein S17	polymer	105	12325.7	2	UniProt (Q5SHP7)	Thermus thermophilus
18	R, SB (AR, CR)	30S Ribosomal Protein S18	polymer	88	10258.3	2	UniProt (Q5SLQ0) Pfam (PF01084)	Thermus thermophilus
19	S, TB (AS, CS)	30S Ribosomal Protein S19	polymer	93	10605.5	2	UniProt (Q5SHP2) Pfam (PF00203)	Thermus thermophilus
20	T, UB (AT, CT)	30S Ribosomal Protein S20	polymer	106	11736.1	2	UniProt (P80380) Pfam (PF01649)	Thermus thermophilus
21	U, VB (AU, CU)	30S Ribosomal Protein THX	polymer	27	3350.0	2	UniProt (Q5SIH3) Pfam (PF17070)	Thermus thermophilus
22	V, WB (AY, CY)	Ribosome-associated inhibitor A	polymer	119	13632.5	2	UniProt (P0AD49) Pfam (PF02482)	Escherichia coli K-12	Protein Y, SpotY, pY
23	W, XB (BA, DA)	23S Ribosomal RNA	polymer	2915	947895.4	2	GenBank (AP008226.1)	Thermus thermophilus
24	X, YB (BB, DB)	5S Ribosomal RNA	polymer	122	39494.5	2	GenBank (AP008226.1)	Thermus thermophilus
25	Y, ZB (BD, DD)	50S Ribosomal Protein L2	polymer	276	30532.6	2	UniProt (P60405) Pfam (PF00181) Pfam (PF03947)	Thermus thermophilus
26	AC, Z (BE, DE)	50S Ribosomal Protein L3	polymer	206	22450.2	2	UniProt (Q5SHN8) Pfam (PF00297)	Thermus thermophilus
27	AA, BC (BF, DF)	50S Ribosomal Protein L4	polymer	210	23271.9	2	UniProt (Q5SHN9) Pfam (PF00573)	Thermus thermophilus
28	BA, CC (BG, DG)	50S Ribosomal Protein L5	polymer	182	21061.6	2	UniProt (Q5SHQ0) Pfam (PF00281) Pfam (PF00673)	Thermus thermophilus
29	CA, DC (BH, DH)	50S Ribosomal Protein L6	polymer	180	19568.9	2	UniProt (Q5SHQ3)	Thermus thermophilus
30	DA, EC (BI, DI)	50S Ribosomal Protein L9	polymer	148	16422.2	2	UniProt (Q5SLQ1) Pfam (PF01281) Pfam (PF03948)	Thermus thermophilus
31	EA, FC (BN, DN)	50S Ribosomal Protein L13	polymer	140	15927.9	2	UniProt (P60488) Pfam (PF00572)	Thermus thermophilus
32	FA, GC (BO, DO)	50S Ribosomal Protein L14	polymer	122	13323.6	2	UniProt (Q5SHP8) Pfam (PF00238)	Thermus thermophilus
33	GA, HC (BP, DP)	50S Ribosomal Protein L15	polymer	150	16319.1	2	UniProt (Q5SHQ7) Pfam (PF00828)	Thermus thermophilus
34	HA, IC (BQ, DQ)	50S Ribosomal Protein L16	polymer	141	15993.9	2	UniProt (P60489) Pfam (PF00252)	Thermus thermophilus
35	IA, JC (BR, DR)	50S Ribosomal Protein L17	polymer	118	13750.1	2	UniProt (Q9Z9H5) Pfam (PF01196)	Thermus thermophilus
36	JA, KC (BS, DS)	50S Ribosomal Protein L18	polymer	112	12639.8	2	UniProt (Q5SHQ4) Pfam (PF00861)	Thermus thermophilus
37	KA, LC (BT, DT)	50S Ribosomal Protein L19	polymer	146	17188.8	2	UniProt (P60490) Pfam (PF01245)	Thermus thermophilus
38	LA, MC (BU, DU)	50S Ribosomal Protein L20	polymer	118	13779.3	2	UniProt (P60491) Pfam (PF00453)	Thermus thermophilus
39	MA, NC (BV, DV)	50S Ribosomal Protein L21	polymer	101	11069.2	2	UniProt (P60492) Pfam (PF00829)	Thermus thermophilus
40	NA, OC (BW, DW)	50S Ribosomal Protein L22	polymer	113	12808.1	2	UniProt (Q5SHP3) Pfam (PF00237)	Thermus thermophilus
41	OA, PC (BX, DX)	50S Ribosomal Protein L23	polymer	96	10759.8	2	UniProt (Q5SHP0) Pfam (PF00276)	Thermus thermophilus
42	PA, QC (BY, DY)	50S Ribosomal Protein L24	polymer	110	12085.6	2	UniProt (Q5SHP9) Pfam (PF00467) Pfam (PF17136) UniProt (by SIFTS) (Q56435)	Thermus thermophilus
43	QA, RC (BZ, DZ)	50S Ribosomal Protein L25	polymer	206	23238.6	2	UniProt (Q5SHZ1) Pfam (PF01386) Pfam (PF14693)	Thermus thermophilus
44	RA, SC (B0, D0)	50S Ribosomal Protein L27	polymer	85	9529.1	2	UniProt (P60493) Pfam (PF01016)	Thermus thermophilus
45	SA, TC (B1, D1)	50S Ribosomal Protein L28	polymer	98	11004.2	2	UniProt (P60494) Pfam (PF00830)	Thermus thermophilus
46	TA, UC (B2, D2)	50S Ribosomal Protein L29	polymer	72	8670.3	2	UniProt (Q5SHP6) Pfam (PF00831)	Thermus thermophilus
47	UA, VC (B3, D3)	50S Ribosomal Protein L30	polymer	60	6799.1	2	UniProt (Q5SHQ6) Pfam (PF00327)	Thermus thermophilus
48	VA, WC (B4, D4)	50S Ribosomal Protein L31	polymer	71	8300.5	2	UniProt (Q5SJE1) Pfam (PF01197)	Thermus thermophilus
49	WA, XC (B5, D5)	50S Ribosomal Protein L32	polymer	60	6722.1	2	UniProt (P80339) Pfam (PF01783)	Thermus thermophilus
50	XA, YC (B6, D6)	50S Ribosomal Protein L33	polymer	54	6632.9	2	UniProt (P35871) Pfam (PF00471)	Thermus thermophilus
51	YA, ZC (B7, D7)	50S Ribosomal Protein L34	polymer	49	6132.4	2	UniProt (P80340) Pfam (PF00468)	Thermus thermophilus
52	AD, ZA (B8, D8)	50S Ribosomal Protein L35	polymer	65	7506.2	2	UniProt (Q5SKU1) Pfam (PF01632)	Thermus thermophilus
53	AB, BD (B9, D9)	50S ribosomal protein L36	polymer	37	4435.4	2	UniProt (Q5SHR2) Pfam (PF00444) UniProt (by SIFTS) (P80256)	Thermus thermophilus	Ribosomal protein B
54	AAA, AAB, ABA, ABB, ACA... (BA, DA, AA, BB, BE...)	MAGNESIUM ION	non-polymer		24.3	1931	Chemie (MG)
55	ARA, CRA, DRA, GZA, HRA... (B4, B5, B6, CD, B9...)	ZINC ION	non-polymer		65.4	14	Chemie (ZN)
56	AAC, ABC, ACC, BAC, BBC... (AF, BW, DE, AG, BX...)	water	water		18.0	4732	Chemie (HOH)

Sequence modifications

AY, CY: 1 - 113 (UniProt: P0AD49)

PDB	External Database	Details
His 114	-	expression tag
His 115	-	expression tag
His 116	-	expression tag
His 117	-	expression tag
His 118	-	expression tag
His 119	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	106
	Total formula weight	4364680.8
Non-Polymers*	Number of molecules	1945
	Total formula weight	47848.7
All*	Total formula weight	4412529.4

*Water molecules are not included.