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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4V8A

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AA, BA23S ribosomal RNApolymer2915947934.42GenBank (AP008226.1)Thermus thermophilus
2AB, BB5S ribosomal RNApolymer12239510.52GenBank (AP008226.1)Thermus thermophilus
3AD, BD50S ribosomal protein L2polymer27630532.62UniProt (P60405)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Thermus thermophilus
4AE, BE50S ribosomal protein L3polymer20622450.22UniProt (Q5SHN8)
Pfam (PF00297)
In PDB		Thermus thermophilus
5AF, BF50S ribosomal protein L4polymer20522712.22UniProt (Q5SHN9)
Pfam (PF00573)
In PDB		Thermus thermophilus
6AG, BG50S ribosomal protein L5polymer18221061.62UniProt (Q5SHQ0)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Thermus thermophilus
7AH, BH50S ribosomal protein L6polymer18019568.92UniProt (Q5SHQ3)
In PDB		Thermus thermophilus
8AI, BI50S ribosomal protein L9polymer14816436.22UniProt (Q5SLQ1)
Pfam (PF01281)
Pfam (PF03948)
In PDB		Thermus thermophilus
9AN, BN50S ribosomal protein L13polymer14015927.92UniProt (P60488)
Pfam (PF00572)
In PDB		Thermus thermophilus
10AO, BO50S ribosomal protein L14polymer12213323.62UniProt (Q5SHP8)
Pfam (PF00238)
In PDB		Thermus thermophilus
11AP, BP50S ribosomal protein L15polymer15016319.12UniProt (Q5SHQ7)
Pfam (PF00828)
In PDB		Thermus thermophilus
12AQ, BQ50S ribosomal protein L16polymer14115993.92UniProt (P60489)
Pfam (PF00252)
In PDB		Thermus thermophilus
13AR, BR50S ribosomal protein L17polymer11813750.12UniProt (Q9Z9H5)
Pfam (PF01196)
In PDB		Thermus thermophilus
14AS, BS50S ribosomal protein L18polymer11212639.82UniProt (Q5SHQ4)
Pfam (PF00861)
In PDB		Thermus thermophilus
15AT, BT50S ribosomal protein L19polymer14617188.82UniProt (P60490)
Pfam (PF01245)
In PDB		Thermus thermophilus
16AU, BU50S ribosomal protein L20polymer11813779.32UniProt (P60491)
Pfam (PF00453)
In PDB		Thermus thermophilus
17AV, BV50S ribosomal protein L21polymer10111069.22UniProt (P60492)
Pfam (PF00829)
In PDB		Thermus thermophilus
18AW, BW50S ribosomal protein L22polymer11312808.12UniProt (Q5SHP3)
Pfam (PF00237)
In PDB		Thermus thermophilus
19AX, BX50S ribosomal protein L23polymer9610759.82UniProt (Q5SHP0)
Pfam (PF00276)
In PDB		Thermus thermophilus
20AY, BY50S ribosomal protein L24polymer11012085.62UniProt (Q5SHP9)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Thermus thermophilus
21AZ, BZ50S ribosomal protein L25polymer20623238.62UniProt (Q5SHZ1)
Pfam (PF01386)
Pfam (PF14693)
In PDB		Thermus thermophilus
22A0, B050S ribosomal protein L27polymer859529.12UniProt (P60493)
Pfam (PF01016)
In PDB		Thermus thermophilus
23A1, B150S ribosomal protein L28polymer9811004.22UniProt (P60494)
Pfam (PF00830)
In PDB		Thermus thermophilus
24A2, B250S ribosomal protein L29polymer728670.32UniProt (Q5SHP6)
Pfam (PF00831)
In PDB		Thermus thermophilus
25A3, B350S ribosomal protein L30polymer606799.12UniProt (Q5SHQ6)
Pfam (PF00327)
In PDB		Thermus thermophilus
26A4, B450S ribosomal protein L31polymer718300.52UniProt (Q5SJE1)
Pfam (PF01197)
In PDB		Thermus thermophilus
27A5, B550S ribosomal protein L32polymer606722.12UniProt (P80339)
Pfam (PF01783)
In PDB		Thermus thermophilus
28A6, B650S ribosomal protein L33polymer546632.92UniProt (P35871)
Pfam (PF00471)
In PDB		Thermus thermophilus
29A7, B750S ribosomal protein L34polymer496132.42UniProt (P80340)
Pfam (PF00468)
In PDB		Thermus thermophilus
30A8, B850S ribosomal protein L35polymer657506.22UniProt (Q5SKU1)
Pfam (PF01632)
In PDB		Thermus thermophilus
31CA, DA16S ribosomal RNApolymer1521493652.22GenBank (AP008226.1)Thermus thermophilus
32CB, DB30S ribosomal protein S2polymer25629317.72UniProt (P80371)
Pfam (PF00318)
In PDB		Thermus thermophilus
33CC, DC30S ribosomal protein S3polymer23926751.12UniProt (P80372)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Thermus thermophilus
34CD, DD30S ribosomal protein S4polymer20924373.42UniProt (P80373)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Thermus thermophilus
35CE, DE30S ribosomal protein S5polymer16217583.42UniProt (Q5SHQ5)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Thermus thermophilus
36CF, DF30S ribosomal protein S6polymer10111988.82UniProt (Q5SLP8)
Pfam (PF01250)
In PDB		Thermus thermophilus
37CG, DG30S ribosomal protein S7polymer15618051.02UniProt (P17291)
Pfam (PF00177)
In PDB		Thermus thermophilus
38CH, DH30S ribosomal protein S8polymer13815868.62UniProt (Q5SHQ2)
In PDB		Thermus thermophilus
39CI, DI30S ribosomal protein S9polymer12814429.72UniProt (P80374)
Pfam (PF00380)
In PDB		Thermus thermophilus
40CJ, DJ30S ribosomal protein S10polymer10511955.02UniProt (Q5SHN7)
Pfam (PF00338)
In PDB		Thermus thermophilus
41CK, DK30S ribosomal protein S11polymer12913737.92UniProt (P80376)
Pfam (PF00411)
In PDB		Thermus thermophilus
42CL, DL30S ribosomal protein S12polymer13214637.42UniProt (Q5SHN3)
Pfam (PF00164)
In PDB		Thermus thermophilus
43CM, DM30S ribosomal protein S13polymer12614338.92UniProt (P80377)
Pfam (PF00416)
In PDB		Thermus thermophilus
44CN, DN30S ribosomal protein S14polymer617158.72UniProt (Q5SHQ1)
In PDB		Thermus thermophilus
45CO, DO30S ribosomal protein S15polymer8910578.42UniProt (Q5SJ76)
Pfam (PF00312)
In PDB		Thermus thermophilus
46CP, DP30S ribosomal protein S16polymer8810410.02UniProt (Q5SJH3)
Pfam (PF00886)
In PDB		Thermus thermophilus
47CQ, DQ30S ribosomal protein S17polymer10512325.72UniProt (Q5SHP7)
In PDB		Thermus thermophilus
48CR, DR30S ribosomal protein S18polymer8810258.32UniProt (Q5SLQ0)
Pfam (PF01084)
In PDB		Thermus thermophilus
49CS, DS30S ribosomal protein S19polymer9310605.52UniProt (Q5SHP2)
Pfam (PF00203)
In PDB		Thermus thermophilus
50CT, DT30S ribosomal protein S20polymer10611736.12UniProt (P80380)
Pfam (PF01649)
In PDB		Thermus thermophilus
51CU, DU30S ribosomal protein THXpolymer273350.02UniProt (Q5SIH3)
Pfam (PF17070)
In PDB		Thermus thermophilus
52BA, AAThermorubinnon-polymer600.52Chemie (T8B)
53AA, BAMAGNESIUM IONnon-polymer24.34Chemie (MG)
Sequence modifications
AA, BA: 2 - 2907 (GenBank: AP008226.1)
PDBExternal DatabaseDetails
G 272U 352315CONFLICT
AB, BB: 1 - 122 (GenBank: AP008226.1)
PDBExternal DatabaseDetails
G 120A 12354CONFLICT
AI, BI: 1 - 148 (UniProt: Q5SLQ1)
PDBExternal DatabaseDetails
Glu 110Asp 110CONFLICT
CA, DA: 0 - 1544 (GenBank: AP008226.1)
PDBExternal DatabaseDetails
-U 131385DELETION
CI, DI: 1 - 128 (UniProt: P80374)
PDBExternal DatabaseDetails
Arg 58His 58CONFLICT
CJ, DJ: 1 - 105 (UniProt: Q5SHN7)
PDBExternal DatabaseDetails
Leu 75Ile 75CONFLICT
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains102
Total formula weight4326989.6
Non-Polymers*Number of molecules6
Total formula weight1298.3
All*Total formula weight4328287.9
*Water molecules are not included.

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PDB entries from 2024-07-31

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