4V68
T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | AA | 16S rRNA | polymer | 1504 | 488391.2 | 1 | Thermus thermophilus | ||
2 | AB | 30S ribosomal protein S2 | polymer | 235 | 27116.4 | 1 | UniProt (P80371) Pfam (PF00318) In PDB | Thermus thermophilus | |
3 | AD | 30S ribosomal protein S4 | polymer | 208 | 24242.3 | 1 | UniProt (P80373) Pfam (PF00163) Pfam (PF01479) In PDB | Thermus thermophilus | |
4 | AE | 30S ribosomal protein S5 | polymer | 151 | 16460.2 | 1 | UniProt (Q5SHQ5) Pfam (PF00333) Pfam (PF03719) In PDB | Thermus thermophilus | |
5 | AF | 30S ribosomal protein S6 | polymer | 101 | 11988.8 | 1 | UniProt (Q5SLP8) Pfam (PF01250) In PDB | Thermus thermophilus | |
6 | AH | 30S ribosomal protein S8 | polymer | 138 | 15868.6 | 1 | UniProt (Q5SHQ2) In PDB | Thermus thermophilus | |
7 | AK | 30S ribosomal protein S11 | polymer | 119 | 12606.4 | 1 | UniProt (P80376) Pfam (PF00411) In PDB | Thermus thermophilus | |
8 | AL | 30S ribosomal protein S12 | polymer | 125 | 13875.4 | 1 | UniProt (Q5SHN3) Pfam (PF00164) In PDB | Thermus thermophilus | |
9 | AO | 30S ribosomal protein S15 | polymer | 88 | 10447.2 | 1 | UniProt (Q5SJ76) Pfam (PF00312) In PDB | Thermus thermophilus | |
10 | AP | 30S ribosomal protein S16 | polymer | 84 | 9995.5 | 1 | UniProt (Q5SJH3) Pfam (PF00886) In PDB | Thermus thermophilus | |
11 | AQ | 30S ribosomal protein S17 | polymer | 100 | 11880.1 | 1 | UniProt (Q5SHP7) In PDB | Thermus thermophilus | |
12 | AR | 30S ribosomal protein S18 | polymer | 70 | 8155.8 | 1 | UniProt (Q5SLQ0) Pfam (PF01084) In PDB | Thermus thermophilus | |
13 | AT | 30S ribosomal protein S20 | polymer | 99 | 10921.1 | 1 | UniProt (P80380) Pfam (PF01649) In PDB | Thermus thermophilus | |
14 | AC | 30S ribosomal protein S3 | polymer | 207 | 22975.6 | 1 | UniProt (P80372) Pfam (PF07650) Pfam (PF00189) In PDB | Thermus thermophilus | |
15 | AG | 30S ribosomal protein S7 | polymer | 155 | 17919.8 | 1 | UniProt (P17291) Pfam (PF00177) In PDB | Thermus thermophilus | |
16 | AI | 30S ribosomal protein S9 | polymer | 127 | 14298.5 | 1 | UniProt (P62669) Pfam (PF00380) In PDB | Thermus thermophilus | |
17 | AJ | 30S ribosomal protein S10 | polymer | 99 | 11398.3 | 1 | UniProt (Q5SHN7) Pfam (PF00338) In PDB | Thermus thermophilus | |
18 | AM | 30S ribosomal protein S13 | polymer | 125 | 14207.7 | 1 | UniProt (P80377) Pfam (PF00416) In PDB | Thermus thermophilus | |
19 | AN | 30S ribosomal protein S14 | polymer | 60 | 7027.5 | 1 | UniProt (Q5SHQ1) In PDB | Thermus thermophilus | |
20 | AS | 30S ribosomal protein S19 | polymer | 79 | 9006.5 | 1 | UniProt (Q5SHP2) Pfam (PF00203) In PDB | Thermus thermophilus | |
21 | AU | 30S ribosomal protein Thx | polymer | 25 | 3089.7 | 1 | UniProt (Q5SIH3) Pfam (PF17070) In PDB | Thermus thermophilus | |
22 | AV | P-SITE TRNA | polymer | 77 | 24816.8 | 1 | Thermus thermophilus | ||
23 | AX | SYNTHETIC MRNA | polymer | 6 | 1923.2 | 1 | |||
24 | AW | E-SITE TRNA | polymer | 76 | 24485.5 | 1 | Thermus thermophilus | ||
25 | AY | AT-SITE TRNA | polymer | 72 | 23583.3 | 1 | Thermus thermophilus | ||
26 | A0 | MRNA CODON | polymer | 3 | 873.5 | 1 | UniProt (Q5SHN6) In PDB | ||
27 | AZ | Elongation factor Tu-A | polymer | 405 | 44709.9 | 1 | UniProt (P60339) Pfam (PF00009) Pfam (PF03144) Pfam (PF03143) In PDB | Thermus thermophilus | |
28 | B0 | 50S ribosomal protein L27 | polymer | 85 | 9529.1 | 1 | UniProt (P60493) Pfam (PF01016) In PDB | Thermus thermophilus | |
29 | B1 | 50S ribosomal protein L28 | polymer | 89 | 9985.8 | 1 | UniProt (P60494) Pfam (PF00830) In PDB | Thermus thermophilus | |
30 | B2 | 50S ribosomal protein L29 | polymer | 51 | 6112.2 | 1 | UniProt (Q5SHP6) Pfam (PF00831) In PDB | Thermus thermophilus | |
31 | B3 | 50S ribosomal protein L30 | polymer | 60 | 6799.1 | 1 | UniProt (Q5SHQ6) Pfam (PF00327) In PDB | Thermus thermophilus | |
32 | B4 | 50S ribosomal protein L31 | polymer | 50 | 5679.7 | 1 | UniProt (Q5SJE1) Pfam (PF01197) In PDB | Thermus thermophilus | |
33 | B5 | 50S ribosomal protein L32 | polymer | 59 | 6590.9 | 1 | UniProt (P80339) Pfam (PF01783) In PDB | Thermus thermophilus | |
34 | B6 | 50S ribosomal protein L33 | polymer | 45 | 5602.6 | 1 | UniProt (P35871) Pfam (PF00471) In PDB | Thermus thermophilus | |
35 | B7 | 50S ribosomal protein L34 | polymer | 49 | 6132.4 | 1 | UniProt (P80340) Pfam (PF00468) In PDB | Thermus thermophilus | |
36 | B8 | 50S ribosomal protein L35 | polymer | 64 | 7375.0 | 1 | UniProt (P80341) Pfam (PF01632) In PDB | Thermus thermophilus | |
37 | B9 | 50S ribosomal protein L36 | polymer | 35 | 4247.2 | 1 | UniProt (Q72I28) Pfam (PF00444) In PDB | Thermus thermophilus | |
38 | BA | 23S rRNA | polymer | 2852 | 927659.6 | 1 | Thermus thermophilus | ||
39 | BB | 5S rRNA | polymer | 119 | 38553.0 | 1 | Thermus thermophilus | ||
40 | BC | 50S ribosomal protein L1 | polymer | 191 | 20661.8 | 1 | UniProt (Q5SLP7) Pfam (PF00687) In PDB | Thermus thermophilus | |
41 | BD | 50S ribosomal protein L2 | polymer | 272 | 29985.8 | 1 | UniProt (P60405) Pfam (PF00181) Pfam (PF03947) In PDB | Thermus thermophilus | |
42 | BE | 50S ribosomal protein L3 | polymer | 205 | 22321.0 | 1 | UniProt (Q5SHN8) Pfam (PF00297) In PDB | Thermus thermophilus | |
43 | BF | 50S ribosomal protein L4 | polymer | 208 | 23071.7 | 1 | UniProt (Q5SHN9) Pfam (PF00573) In PDB | Thermus thermophilus | |
44 | BG | 50S ribosomal protein L5 | polymer | 181 | 20930.4 | 1 | UniProt (Q5SHQ0) Pfam (PF00281) Pfam (PF00673) In PDB | Thermus thermophilus | |
45 | BH | 50S ribosomal protein L6 | polymer | 160 | 17476.3 | 1 | UniProt (Q5SHQ3) In PDB | Thermus thermophilus | |
46 | BI | 50S ribosomal protein L9 | polymer | 146 | 16193.0 | 1 | UniProt (Q5SLQ1) Pfam (PF01281) Pfam (PF03948) In PDB | Thermus thermophilus | |
47 | BL | 50S ribosomal protein L11 | polymer | 138 | 14626.1 | 1 | UniProt (P36238) Pfam (PF03946) Pfam (PF00298) In PDB | Thermus thermophilus | |
48 | BN | 50S ribosomal protein L13 | polymer | 139 | 15828.8 | 1 | UniProt (P60488) Pfam (PF00572) In PDB | Thermus thermophilus | |
49 | BO | 50S ribosomal protein L14 | polymer | 122 | 13323.6 | 1 | UniProt (Q5SHP8) Pfam (PF00238) In PDB | Thermus thermophilus | |
50 | BP | 50S ribosomal protein L15 | polymer | 146 | 15858.5 | 1 | UniProt (Q5SHQ7) Pfam (PF00828) In PDB | Thermus thermophilus | |
51 | BQ | 50S ribosomal protein L16 | polymer | 136 | 15364.0 | 1 | UniProt (P60489) Pfam (PF00252) In PDB | Thermus thermophilus | |
52 | BR | 50S ribosomal protein L17 | polymer | 117 | 13619.0 | 1 | UniProt (Q9Z9H5) Pfam (PF01196) In PDB | Thermus thermophilus | |
53 | BS | 50S ribosomal protein L18 | polymer | 99 | 10998.9 | 1 | UniProt (Q5SHQ4) Pfam (PF00861) In PDB | Thermus thermophilus | |
54 | BT | 50S ribosomal protein L19 | polymer | 138 | 16289.9 | 1 | UniProt (P60490) Pfam (PF01245) In PDB | Thermus thermophilus | |
55 | BU | 50S ribosomal protein L20 | polymer | 117 | 13648.1 | 1 | UniProt (P60491) Pfam (PF00453) In PDB | Thermus thermophilus | |
56 | BV | 50S ribosomal protein L21 | polymer | 101 | 11069.2 | 1 | UniProt (P60492) Pfam (PF00829) In PDB | Thermus thermophilus | |
57 | BW | 50S ribosomal protein L22 | polymer | 113 | 12808.1 | 1 | UniProt (Q5SHP3) Pfam (PF00237) In PDB | Thermus thermophilus | |
58 | BX | 50S ribosomal protein L23 | polymer | 93 | 10386.3 | 1 | UniProt (Q5SHP0) Pfam (PF00276) In PDB | Thermus thermophilus | |
59 | BY | 50S ribosomal protein L24 | polymer | 101 | 11181.7 | 1 | UniProt (Q5SHP9) Pfam (PF00467) Pfam (PF17136) In PDB | Thermus thermophilus | |
60 | BZ | 50S ribosomal protein L25 | polymer | 177 | 20008.0 | 1 | UniProt (Q5SHZ1) Pfam (PF01386) Pfam (PF14693) In PDB | Thermus thermophilus | |
61 | AY | PHENYLALANINAL | non-polymer | 149.2 | 1 | Chemie (PHA) | |||
62 | AZ | GUANOSINE-5'-DIPHOSPHATE | non-polymer | 443.2 | 1 | Chemie (GDP) | |||
63 | AZ | N-METHYL KIRROMYCIN | non-polymer | 811.0 | 1 | Chemie (MAU) | |||
64 | AZ | BETA-MERCAPTOETHANOL | non-polymer | 78.1 | 1 | Chemie (BME) |
Sequence modifications
A0: 100 - 102 (UniProt: Q5SHN6)
BC: 18 - 224 (UniProt: Q5SLP7)
BI: 1 - 146 (UniProt: Q5SLQ1)
PDB | External Database | Details |
---|---|---|
U 100 | A 2 | conflict |
U 101 | K 3 | conflict |
U 102 | G 4 | conflict |
PDB | External Database | Details |
---|---|---|
- | Leu 29 | deletion |
- | Val 30 | deletion |
- | Lys 31 | deletion |
- | Glu 32 | deletion |
- | Leu 33 | deletion |
- | Ala 34 | deletion |
- | Asp 112 | deletion |
- | Ala 113 | deletion |
- | Val 114 | deletion |
- | Val 115 | deletion |
- | Ala 116 | deletion |
- | Thr 117 | deletion |
- | Pro 118 | deletion |
- | Asp 119 | deletion |
- | Leu 138 | deletion |
- | Pro 139 | deletion |
PDB | External Database | Details |
---|---|---|
Val 146 | Ala 146 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 60 |
Total formula weight | 2262181.3 | |
Non-Polymers* | Number of molecules | 4 |
Total formula weight | 1481.5 | |
All* | Total formula weight | 2263662.8 |