4V68
T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (AA) | 16S rRNA | polymer | 1504 | 488391.2 | 1 | Thermus thermophilus | ||
| 2 | B (AB) | 30S ribosomal protein S2 | polymer | 235 | 27116.4 | 1 | UniProt (P80371) Pfam (PF00318) | Thermus thermophilus | |
| 3 | C (AD) | 30S ribosomal protein S4 | polymer | 208 | 24242.3 | 1 | UniProt (P80373) Pfam (PF00163) Pfam (PF01479) | Thermus thermophilus | |
| 4 | D (AE) | 30S ribosomal protein S5 | polymer | 151 | 16460.2 | 1 | UniProt (Q5SHQ5) Pfam (PF00333) Pfam (PF03719) | Thermus thermophilus | |
| 5 | E (AF) | 30S ribosomal protein S6 | polymer | 101 | 11988.8 | 1 | UniProt (Q5SLP8) Pfam (PF01250) | Thermus thermophilus | |
| 6 | F (AH) | 30S ribosomal protein S8 | polymer | 138 | 15868.6 | 1 | UniProt (Q5SHQ2) | Thermus thermophilus | |
| 7 | G (AK) | 30S ribosomal protein S11 | polymer | 119 | 12606.4 | 1 | UniProt (P80376) Pfam (PF00411) | Thermus thermophilus | |
| 8 | H (AL) | 30S ribosomal protein S12 | polymer | 125 | 13875.4 | 1 | UniProt (Q5SHN3) Pfam (PF00164) | Thermus thermophilus | |
| 9 | I (AO) | 30S ribosomal protein S15 | polymer | 88 | 10447.2 | 1 | UniProt (Q5SJ76) Pfam (PF00312) | Thermus thermophilus | |
| 10 | J (AP) | 30S ribosomal protein S16 | polymer | 84 | 9995.5 | 1 | UniProt (Q5SJH3) Pfam (PF00886) | Thermus thermophilus | |
| 11 | K (AQ) | 30S ribosomal protein S17 | polymer | 100 | 11880.1 | 1 | UniProt (Q5SHP7) | Thermus thermophilus | |
| 12 | L (AR) | 30S ribosomal protein S18 | polymer | 70 | 8155.8 | 1 | UniProt (Q5SLQ0) Pfam (PF01084) | Thermus thermophilus | |
| 13 | M (AT) | 30S ribosomal protein S20 | polymer | 99 | 10921.1 | 1 | UniProt (P80380) Pfam (PF01649) | Thermus thermophilus | |
| 14 | N (AC) | 30S ribosomal protein S3 | polymer | 207 | 22975.6 | 1 | UniProt (P80372) Pfam (PF07650) Pfam (PF00189) | Thermus thermophilus | |
| 15 | O (AG) | 30S ribosomal protein S7 | polymer | 155 | 17919.8 | 1 | UniProt (P17291) Pfam (PF00177) | Thermus thermophilus | |
| 16 | P (AI) | 30S ribosomal protein S9 | polymer | 127 | 14298.5 | 1 | UniProt (P62669) Pfam (PF00380) | Thermus thermophilus | |
| 17 | Q (AJ) | 30S ribosomal protein S10 | polymer | 99 | 11398.3 | 1 | UniProt (Q5SHN7) Pfam (PF00338) | Thermus thermophilus | |
| 18 | R (AM) | 30S ribosomal protein S13 | polymer | 125 | 14207.7 | 1 | UniProt (P80377) Pfam (PF00416) | Thermus thermophilus | |
| 19 | S (AN) | 30S ribosomal protein S14 | polymer | 60 | 7027.5 | 1 | UniProt (Q5SHQ1) | Thermus thermophilus | |
| 20 | T (AS) | 30S ribosomal protein S19 | polymer | 79 | 9006.5 | 1 | UniProt (Q5SHP2) Pfam (PF00203) | Thermus thermophilus | |
| 21 | U (AU) | 30S ribosomal protein Thx | polymer | 25 | 3089.7 | 1 | UniProt (Q5SIH3) Pfam (PF17070) | Thermus thermophilus | |
| 22 | V (AV) | P-SITE TRNA | polymer | 77 | 24816.8 | 1 | Thermus thermophilus | ||
| 23 | W (AX) | SYNTHETIC MRNA | polymer | 6 | 1923.2 | 1 | |||
| 24 | X (AW) | E-SITE TRNA | polymer | 76 | 24485.5 | 1 | Thermus thermophilus | ||
| 25 | Y (AY) | AT-SITE TRNA | polymer | 72 | 23583.3 | 1 | Thermus thermophilus | ||
| 26 | Z (A0) | MRNA CODON | polymer | 3 | 873.5 | 1 | UniProt (Q5SHN6) | ||
| 27 | AA (AZ) | Elongation factor Tu-A | polymer | 405 | 44709.9 | 1 | UniProt (P60339) Pfam (PF00009) Pfam (PF03144) Pfam (PF03143) | Thermus thermophilus | |
| 28 | BA (B0) | 50S ribosomal protein L27 | polymer | 85 | 9529.1 | 1 | UniProt (P60493) Pfam (PF01016) | Thermus thermophilus | |
| 29 | CA (B1) | 50S ribosomal protein L28 | polymer | 89 | 9985.8 | 1 | UniProt (P60494) Pfam (PF00830) | Thermus thermophilus | |
| 30 | DA (B2) | 50S ribosomal protein L29 | polymer | 51 | 6112.2 | 1 | UniProt (Q5SHP6) Pfam (PF00831) | Thermus thermophilus | |
| 31 | EA (B3) | 50S ribosomal protein L30 | polymer | 60 | 6799.1 | 1 | UniProt (Q5SHQ6) Pfam (PF00327) | Thermus thermophilus | |
| 32 | FA (B4) | 50S ribosomal protein L31 | polymer | 50 | 5679.7 | 1 | UniProt (Q5SJE1) Pfam (PF01197) | Thermus thermophilus | |
| 33 | GA (B5) | 50S ribosomal protein L32 | polymer | 59 | 6590.9 | 1 | UniProt (P80339) Pfam (PF01783) | Thermus thermophilus | |
| 34 | HA (B6) | 50S ribosomal protein L33 | polymer | 45 | 5602.6 | 1 | UniProt (P35871) Pfam (PF00471) | Thermus thermophilus | |
| 35 | IA (B7) | 50S ribosomal protein L34 | polymer | 49 | 6132.4 | 1 | UniProt (P80340) Pfam (PF00468) | Thermus thermophilus | |
| 36 | JA (B8) | 50S ribosomal protein L35 | polymer | 64 | 7375.0 | 1 | UniProt (P80341) Pfam (PF01632) | Thermus thermophilus | |
| 37 | KA (B9) | 50S ribosomal protein L36 | polymer | 35 | 4247.2 | 1 | UniProt (Q72I28) Pfam (PF00444) | Thermus thermophilus | |
| 38 | LA (BA) | 23S rRNA | polymer | 2852 | 927659.6 | 1 | Thermus thermophilus | ||
| 39 | MA (BB) | 5S rRNA | polymer | 119 | 38553.0 | 1 | Thermus thermophilus | ||
| 40 | NA (BC) | 50S ribosomal protein L1 | polymer | 191 | 20661.8 | 1 | UniProt (Q5SLP7) Pfam (PF00687) | Thermus thermophilus | |
| 41 | OA (BD) | 50S ribosomal protein L2 | polymer | 272 | 29985.8 | 1 | UniProt (P60405) Pfam (PF00181) Pfam (PF03947) | Thermus thermophilus | |
| 42 | PA (BE) | 50S ribosomal protein L3 | polymer | 205 | 22321.0 | 1 | UniProt (Q5SHN8) Pfam (PF00297) | Thermus thermophilus | |
| 43 | QA (BF) | 50S ribosomal protein L4 | polymer | 208 | 23071.7 | 1 | UniProt (Q5SHN9) Pfam (PF00573) | Thermus thermophilus | |
| 44 | RA (BG) | 50S ribosomal protein L5 | polymer | 181 | 20930.4 | 1 | UniProt (Q5SHQ0) Pfam (PF00281) Pfam (PF00673) | Thermus thermophilus | |
| 45 | SA (BH) | 50S ribosomal protein L6 | polymer | 160 | 17476.3 | 1 | UniProt (Q5SHQ3) | Thermus thermophilus | |
| 46 | TA (BI) | 50S ribosomal protein L9 | polymer | 146 | 16193.0 | 1 | UniProt (Q5SLQ1) Pfam (PF01281) Pfam (PF03948) | Thermus thermophilus | |
| 47 | UA (BL) | 50S ribosomal protein L11 | polymer | 138 | 14626.1 | 1 | UniProt (P36238) Pfam (PF03946) Pfam (PF00298) | Thermus thermophilus | |
| 48 | VA (BN) | 50S ribosomal protein L13 | polymer | 139 | 15828.8 | 1 | UniProt (P60488) Pfam (PF00572) | Thermus thermophilus | |
| 49 | WA (BO) | 50S ribosomal protein L14 | polymer | 122 | 13323.6 | 1 | UniProt (Q5SHP8) Pfam (PF00238) | Thermus thermophilus | |
| 50 | XA (BP) | 50S ribosomal protein L15 | polymer | 146 | 15858.5 | 1 | UniProt (Q5SHQ7) Pfam (PF00828) | Thermus thermophilus | |
| 51 | YA (BQ) | 50S ribosomal protein L16 | polymer | 136 | 15364.0 | 1 | UniProt (P60489) Pfam (PF00252) | Thermus thermophilus | |
| 52 | ZA (BR) | 50S ribosomal protein L17 | polymer | 117 | 13619.0 | 1 | UniProt (Q9Z9H5) Pfam (PF01196) | Thermus thermophilus | |
| 53 | AB (BS) | 50S ribosomal protein L18 | polymer | 99 | 10998.9 | 1 | UniProt (Q5SHQ4) Pfam (PF00861) | Thermus thermophilus | |
| 54 | BB (BT) | 50S ribosomal protein L19 | polymer | 138 | 16289.9 | 1 | UniProt (P60490) Pfam (PF01245) | Thermus thermophilus | |
| 55 | CB (BU) | 50S ribosomal protein L20 | polymer | 117 | 13648.1 | 1 | UniProt (P60491) Pfam (PF00453) | Thermus thermophilus | |
| 56 | DB (BV) | 50S ribosomal protein L21 | polymer | 101 | 11069.2 | 1 | UniProt (P60492) Pfam (PF00829) | Thermus thermophilus | |
| 57 | EB (BW) | 50S ribosomal protein L22 | polymer | 113 | 12808.1 | 1 | UniProt (Q5SHP3) Pfam (PF00237) | Thermus thermophilus | |
| 58 | FB (BX) | 50S ribosomal protein L23 | polymer | 93 | 10386.3 | 1 | UniProt (Q5SHP0) Pfam (PF00276) | Thermus thermophilus | |
| 59 | GB (BY) | 50S ribosomal protein L24 | polymer | 101 | 11181.7 | 1 | UniProt (Q5SHP9) Pfam (PF00467) Pfam (PF17136) | Thermus thermophilus | |
| 60 | HB (BZ) | 50S ribosomal protein L25 | polymer | 177 | 20008.0 | 1 | UniProt (Q5SHZ1) Pfam (PF01386) Pfam (PF14693) | Thermus thermophilus | |
| 61 | IB (AY) | PHENYLALANINAL | non-polymer | 149.2 | 1 | Chemie (PHA) | |||
| 62 | JB (AZ) | GUANOSINE-5'-DIPHOSPHATE | non-polymer | 443.2 | 1 | Chemie (GDP) | |||
| 63 | KB (AZ) | N-METHYL KIRROMYCIN | non-polymer | 811.0 | 1 | Chemie (MAU) | |||
| 64 | LB (AZ) | BETA-MERCAPTOETHANOL | non-polymer | 78.1 | 1 | Chemie (BME) |
Sequence modifications
A0: 100 - 102 (UniProt: Q5SHN6)
BC: 18 - 224 (UniProt: Q5SLP7)
BI: 1 - 146 (UniProt: Q5SLQ1)
| PDB | External Database | Details |
|---|---|---|
| U 100 | A 2 | conflict |
| U 101 | K 3 | conflict |
| U 102 | G 4 | conflict |
| PDB | External Database | Details |
|---|---|---|
| - | Leu 29 | deletion |
| - | Val 30 | deletion |
| - | Lys 31 | deletion |
| - | Glu 32 | deletion |
| - | Leu 33 | deletion |
| - | Ala 34 | deletion |
| - | Asp 112 | deletion |
| - | Ala 113 | deletion |
| - | Val 114 | deletion |
| - | Val 115 | deletion |
| - | Ala 116 | deletion |
| - | Thr 117 | deletion |
| - | Pro 118 | deletion |
| - | Asp 119 | deletion |
| - | Leu 138 | deletion |
| - | Pro 139 | deletion |
| PDB | External Database | Details |
|---|---|---|
| Val 146 | Ala 146 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 60 |
| Total formula weight | 2262181.3 | |
| Non-Polymers* | Number of molecules | 4 |
| Total formula weight | 1481.5 | |
| All* | Total formula weight | 2263662.8 |
