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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4V68

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AA16S rRNApolymer1504488391.21Thermus thermophilus
2AB30S ribosomal protein S2polymer23527116.41UniProt (P80371)
Pfam (PF00318)
In PDB		Thermus thermophilus
3AD30S ribosomal protein S4polymer20824242.31UniProt (P80373)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Thermus thermophilus
4AE30S ribosomal protein S5polymer15116460.21UniProt (Q5SHQ5)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Thermus thermophilus
5AF30S ribosomal protein S6polymer10111988.81UniProt (Q5SLP8)
Pfam (PF01250)
In PDB		Thermus thermophilus
6AH30S ribosomal protein S8polymer13815868.61UniProt (Q5SHQ2)
In PDB		Thermus thermophilus
7AK30S ribosomal protein S11polymer11912606.41UniProt (P80376)
Pfam (PF00411)
In PDB		Thermus thermophilus
8AL30S ribosomal protein S12polymer12513875.41UniProt (Q5SHN3)
Pfam (PF00164)
In PDB		Thermus thermophilus
9AO30S ribosomal protein S15polymer8810447.21UniProt (Q5SJ76)
Pfam (PF00312)
In PDB		Thermus thermophilus
10AP30S ribosomal protein S16polymer849995.51UniProt (Q5SJH3)
Pfam (PF00886)
In PDB		Thermus thermophilus
11AQ30S ribosomal protein S17polymer10011880.11UniProt (Q5SHP7)
In PDB		Thermus thermophilus
12AR30S ribosomal protein S18polymer708155.81UniProt (Q5SLQ0)
Pfam (PF01084)
In PDB		Thermus thermophilus
13AT30S ribosomal protein S20polymer9910921.11UniProt (P80380)
Pfam (PF01649)
In PDB		Thermus thermophilus
14AC30S ribosomal protein S3polymer20722975.61UniProt (P80372)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Thermus thermophilus
15AG30S ribosomal protein S7polymer15517919.81UniProt (P17291)
Pfam (PF00177)
In PDB		Thermus thermophilus
16AI30S ribosomal protein S9polymer12714298.51UniProt (P62669)
Pfam (PF00380)
In PDB		Thermus thermophilus
17AJ30S ribosomal protein S10polymer9911398.31UniProt (Q5SHN7)
Pfam (PF00338)
In PDB		Thermus thermophilus
18AM30S ribosomal protein S13polymer12514207.71UniProt (P80377)
Pfam (PF00416)
In PDB		Thermus thermophilus
19AN30S ribosomal protein S14polymer607027.51UniProt (Q5SHQ1)
In PDB		Thermus thermophilus
20AS30S ribosomal protein S19polymer799006.51UniProt (Q5SHP2)
Pfam (PF00203)
In PDB		Thermus thermophilus
21AU30S ribosomal protein Thxpolymer253089.71UniProt (Q5SIH3)
Pfam (PF17070)
In PDB		Thermus thermophilus
22AVP-SITE TRNApolymer7724816.81Thermus thermophilus
23AXSYNTHETIC MRNApolymer61923.21
24AWE-SITE TRNApolymer7624485.51Thermus thermophilus
25AYAT-SITE TRNApolymer7223583.31Thermus thermophilus
26A0MRNA CODONpolymer3873.51UniProt (Q5SHN6)
In PDB
27AZElongation factor Tu-Apolymer40544709.91UniProt (P60339)
Pfam (PF00009)
Pfam (PF03144)
Pfam (PF03143)
In PDB		Thermus thermophilus
28B050S ribosomal protein L27polymer859529.11UniProt (P60493)
Pfam (PF01016)
In PDB		Thermus thermophilus
29B150S ribosomal protein L28polymer899985.81UniProt (P60494)
Pfam (PF00830)
In PDB		Thermus thermophilus
30B250S ribosomal protein L29polymer516112.21UniProt (Q5SHP6)
Pfam (PF00831)
In PDB		Thermus thermophilus
31B350S ribosomal protein L30polymer606799.11UniProt (Q5SHQ6)
Pfam (PF00327)
In PDB		Thermus thermophilus
32B450S ribosomal protein L31polymer505679.71UniProt (Q5SJE1)
Pfam (PF01197)
In PDB		Thermus thermophilus
33B550S ribosomal protein L32polymer596590.91UniProt (P80339)
Pfam (PF01783)
In PDB		Thermus thermophilus
34B650S ribosomal protein L33polymer455602.61UniProt (P35871)
Pfam (PF00471)
In PDB		Thermus thermophilus
35B750S ribosomal protein L34polymer496132.41UniProt (P80340)
Pfam (PF00468)
In PDB		Thermus thermophilus
36B850S ribosomal protein L35polymer647375.01UniProt (P80341)
Pfam (PF01632)
In PDB		Thermus thermophilus
37B950S ribosomal protein L36polymer354247.21UniProt (Q72I28)
Pfam (PF00444)
In PDB		Thermus thermophilus
38BA23S rRNApolymer2852927659.61Thermus thermophilus
39BB5S rRNApolymer11938553.01Thermus thermophilus
40BC50S ribosomal protein L1polymer19120661.81UniProt (Q5SLP7)
Pfam (PF00687)
In PDB		Thermus thermophilus
41BD50S ribosomal protein L2polymer27229985.81UniProt (P60405)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Thermus thermophilus
42BE50S ribosomal protein L3polymer20522321.01UniProt (Q5SHN8)
Pfam (PF00297)
In PDB		Thermus thermophilus
43BF50S ribosomal protein L4polymer20823071.71UniProt (Q5SHN9)
Pfam (PF00573)
In PDB		Thermus thermophilus
44BG50S ribosomal protein L5polymer18120930.41UniProt (Q5SHQ0)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Thermus thermophilus
45BH50S ribosomal protein L6polymer16017476.31UniProt (Q5SHQ3)
In PDB		Thermus thermophilus
46BI50S ribosomal protein L9polymer14616193.01UniProt (Q5SLQ1)
Pfam (PF01281)
Pfam (PF03948)
In PDB		Thermus thermophilus
47BL50S ribosomal protein L11polymer13814626.11UniProt (P36238)
Pfam (PF03946)
Pfam (PF00298)
In PDB		Thermus thermophilus
48BN50S ribosomal protein L13polymer13915828.81UniProt (P60488)
Pfam (PF00572)
In PDB		Thermus thermophilus
49BO50S ribosomal protein L14polymer12213323.61UniProt (Q5SHP8)
Pfam (PF00238)
In PDB		Thermus thermophilus
50BP50S ribosomal protein L15polymer14615858.51UniProt (Q5SHQ7)
Pfam (PF00828)
In PDB		Thermus thermophilus
51BQ50S ribosomal protein L16polymer13615364.01UniProt (P60489)
Pfam (PF00252)
In PDB		Thermus thermophilus
52BR50S ribosomal protein L17polymer11713619.01UniProt (Q9Z9H5)
Pfam (PF01196)
In PDB		Thermus thermophilus
53BS50S ribosomal protein L18polymer9910998.91UniProt (Q5SHQ4)
Pfam (PF00861)
In PDB		Thermus thermophilus
54BT50S ribosomal protein L19polymer13816289.91UniProt (P60490)
Pfam (PF01245)
In PDB		Thermus thermophilus
55BU50S ribosomal protein L20polymer11713648.11UniProt (P60491)
Pfam (PF00453)
In PDB		Thermus thermophilus
56BV50S ribosomal protein L21polymer10111069.21UniProt (P60492)
Pfam (PF00829)
In PDB		Thermus thermophilus
57BW50S ribosomal protein L22polymer11312808.11UniProt (Q5SHP3)
Pfam (PF00237)
In PDB		Thermus thermophilus
58BX50S ribosomal protein L23polymer9310386.31UniProt (Q5SHP0)
Pfam (PF00276)
In PDB		Thermus thermophilus
59BY50S ribosomal protein L24polymer10111181.71UniProt (Q5SHP9)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Thermus thermophilus
60BZ50S ribosomal protein L25polymer17720008.01UniProt (Q5SHZ1)
Pfam (PF01386)
Pfam (PF14693)
In PDB		Thermus thermophilus
61AYPHENYLALANINALnon-polymer149.21Chemie (PHA)
62AZGUANOSINE-5'-DIPHOSPHATEnon-polymer443.21Chemie (GDP)
63AZN-METHYL KIRROMYCINnon-polymer811.01Chemie (MAU)
64AZBETA-MERCAPTOETHANOLnon-polymer78.11Chemie (BME)
Sequence modifications
A0: 100 - 102 (UniProt: Q5SHN6)
PDBExternal DatabaseDetails
U 100A 2conflict
U 101K 3conflict
U 102G 4conflict
BC: 18 - 224 (UniProt: Q5SLP7)
PDBExternal DatabaseDetails
-Leu 29deletion
-Val 30deletion
-Lys 31deletion
-Glu 32deletion
-Leu 33deletion
-Ala 34deletion
-Asp 112deletion
-Ala 113deletion
-Val 114deletion
-Val 115deletion
-Ala 116deletion
-Thr 117deletion
-Pro 118deletion
-Asp 119deletion
-Leu 138deletion
-Pro 139deletion
BI: 1 - 146 (UniProt: Q5SLQ1)
PDBExternal DatabaseDetails
Val 146Ala 146conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains60
Total formula weight2262181.3
Non-Polymers*Number of molecules4
Total formula weight1481.5
All*Total formula weight2263662.8
*Water molecules are not included.

218853

PDB entries from 2024-04-24

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