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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4V61

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AA16S rRNApolymer1491483490.51GenBank (7636084)Spinacea oleracea (spinach)
2ABRibosomal Protein S2polymer23126092.31UniProt (P08242)
Pfam (PF00318)
In PDB		Spinacea oleracea (spinach)
3ACRibosomal Protein S3polymer21824965.21UniProt (P09595)
Pfam (PF00189)
In PDB		Spinacea oleracea (spinach)
4ADRibosomal Protein S4polymer20123454.51UniProt (P13788)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Spinacea oleracea (spinach)
5AERibosomal Protein S5polymer30833626.41UniProt (Q9ST69)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Spinacea oleracea (spinach)
6AFRibosomal Protein S6polymer16818870.41UniProt (P82403)
Pfam (PF01250)
In PDB		Spinacea oleracea (spinach)
7AGRibosomal Protein S7polymer15517378.31UniProt (P82129)
Pfam (PF00177)
In PDB		Spinacea oleracea (spinach)
8AHRibosomal Protein S8polymer13415527.31UniProt (P09597)
Pfam (PF00410)
In PDB		Spinacea oleracea (spinach)
9AIRibosomal Protein S9polymer19721350.81UniProt (P82278)
Pfam (PF00380)
In PDB		Spinacea oleracea (spinach)
10AJRibosomal Protein S10polymer19721632.61Spinacea oleracea (spinach)
11AKRibosomal Protein S11polymer14015085.71UniProt (P06506)
Pfam (PF00411)
In PDB		Spinacea oleracea (spinach)
12ALRibosomal Protein S12polymer12313794.31UniProt (P62128)
Pfam (PF00164)
In PDB		Spinacea oleracea (spinach)
13AMRibosomal Protein S13polymer14516306.11UniProt (P82163)
Pfam (PF00416)
In PDB		Spinacea oleracea (spinach)
14ANRibosomal Protein S14polymer10011809.81UniProt (P06507)
Pfam (PF00253)
In PDB		Spinacea oleracea (spinach)
15AORibosomal Protein S15polymer9010778.81UniProt (Q9M3I4)
Pfam (PF00312)
In PDB		Spinacea oleracea (spinach)
16APRibosomal Protein S16polymer8810454.21UniProt (P28807)
Pfam (PF00886)
In PDB		Spinacea oleracea (spinach)
17AQRibosomal Protein S17polymer14215828.71Spinacea oleracea (spinach)
18ARRibosomal Protein S18polymer10312337.41UniProt (Q9M3K7)
Pfam (PF01084)
In PDB		Spinacea oleracea (spinach)
19ASRibosomal Protein S19polymer9210632.51UniProt (P06508)
Pfam (PF00203)
In PDB		Spinacea oleracea (spinach)
20ATRibosomal Protein S20polymer20221866.41Spinacea oleracea (spinach)
21AURibosomal Protein S21polymer19021701.21Spinacea oleracea (spinach)
22BA23S rRNApolymer2810911368.31EMBL (SOL400848)Spinacea oleracea (spinach)
23BB5S rRNApolymer11737743.41EMBL (SOL400848)Spinacea oleracea (spinach)
24BC4.8S rRNApolymer10333330.91EMBL (SOL400848)Spinacea oleracea (spinach)
25BDRibosomal Protein L1polymer35238681.51UniProt (Q9LE95)
Pfam (PF00687)
In PDB		Spinacea oleracea (spinach)
26BERibosomal Protein L2polymer26929480.21UniProt (P06509)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Spinacea oleracea (spinach)
27BFRibosomal Protein L3polymer25928423.51Spinacea oleracea (spinach)
28BGRibosomal Protein L4polymer29332479.61UniProt (O49937)
Pfam (PF00573)
In PDB		Spinacea oleracea (spinach)
29BHRibosomal Protein L5polymer22024248.21UniProt (P82192)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Spinacea oleracea (spinach)
30BIRibosomal Protein L6polymer22324747.71Spinacea oleracea (spinach)
31BJRibosomal Protein L9polymer19722169.81Spinacea oleracea (spinach)
32BKRibosomal Protein L11polymer22423690.01UniProt (P31164)
Pfam (PF03946)
Pfam (PF00298)
In PDB		Spinacea oleracea (spinach)
33BLRibosomal Protein L13polymer25028211.61UniProt (P12629)
Pfam (PF00572)
In PDB		Spinacea oleracea (spinach)
34BMRibosomal Protein L14polymer12113484.71UniProt (P09596)
Pfam (PF00238)
In PDB		Spinacea oleracea (spinach)
35BNRibosomal Protein L15polymer25727491.21Spinacea oleracea (spinach)
36BORibosomal Protein L16polymer13515328.11UniProt (P17353)
Pfam (PF00252)
In PDB		Spinacea oleracea (spinach)
37BPRibosomal Protein L17polymer20522983.91Spinacea oleracea (spinach)
38BQRibosomal Protein L18polymer16117850.71Spinacea oleracea (spinach)
39BRRibosomal Protein L19polymer23326121.31UniProt (P82413)
Pfam (PF01245)
In PDB		Spinacea oleracea (spinach)
40BSRibosomal Protein L20polymer11914617.31UniProt (P28803)
Pfam (PF00453)
In PDB		Spinacea oleracea (spinach)
41BTRibosomal Protein L21polymer25728554.91UniProt (P24613)
Pfam (PF00829)
In PDB		Spinacea oleracea (spinach)
42BURibosomal Protein L22polymer19923276.71UniProt (P09594)
Pfam (PF00237)
In PDB		Spinacea oleracea (spinach)
43BVRibosomal Protein L23polymer19821832.21UniProt (Q9LWB5)
Pfam (PF00276)
In PDB		Spinacea oleracea (spinach)
44BWRibosomal Protein L24polymer19121481.11UniProt (P27683)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Spinacea oleracea (spinach)
45BXRibosomal Protein L27polymer19821772.01Spinacea oleracea (spinach)
46BYRibosomal Protein L28polymer15116730.71Spinacea oleracea (spinach)
47BZRibosomal Protein L29polymer17319415.51Spinacea oleracea (spinach)
48B1Ribosomal Protein L31polymer14416060.91Spinacea oleracea (spinach)
49B2Ribosomal Protein L32polymer576651.01UniProt (P28804)
In PDB		Spinacea oleracea (spinach)
50B3Ribosomal Protein L33polymer667668.11UniProt (P28805)
Pfam (PF00471)
In PDB		Spinacea oleracea (spinach)
51B4Ribosomal Protein L34polymer15216126.61UniProt (P82244)
Pfam (PF00468)
In PDB		Spinacea oleracea (spinach)
52B5Ribosomal Protein L35polymer15917376.31UniProt (P23326)
Pfam (PF01632)
In PDB		Spinacea oleracea (spinach)
53B6Ribosomal Protein L36polymer10411509.51Spinacea oleracea (spinach)
Sequence modifications
AK: -1 - 138 (UniProt: P06506)
PDBExternal DatabaseDetails
Ser 21-insertion
Ala 22-insertion
AR: 1 - 103 (UniProt: Q9M3K7)
PDBExternal DatabaseDetails
Glu 81-insertion
Lys 82-insertion
BT: 0 - 256 (UniProt: P24613)
PDBExternal DatabaseDetails
Ile 122-insertion
BU: 1 - 199 (UniProt: P09594)
PDBExternal DatabaseDetails
Leu 126Lys 126conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains53
Total formula weight2447890.7
All*Total formula weight2447890.7
*Water molecules are not included.

218853

PDB entries from 2024-04-24

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