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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4V4I

Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.

This is a non-PDB format compatible entry.
Replaces:  1VS9Replaces:  2I1C
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1w23S LARGE SUBUNIT RIBOSOMAL RNApolymer2889939562.21Thermus thermophilus
2x5S LARGE SUBUNIT RIBOSOMAL RNApolymer12139211.41GenBank (48271)Thermus thermophilus
3A50S ribosomal protein L1polymer22924867.71UniProt (Q72GV9)
UniProt (by SIFTS) (Q5SLP7)
Pfam (PF00687)
In PDB		Thermus thermophilus
4B50S ribosomal protein L2polymer27630532.61UniProt (Q72I07)
UniProt (by SIFTS) (P60405)
Pfam (PF03947)
Pfam (PF00181)
In PDB		Thermus thermophilus
5C50S ribosomal protein L3polymer20622450.21UniProt (Q72I04)
UniProt (by SIFTS) (Q5SHN8)
Pfam (PF00297)
In PDB		Thermus thermophilus
6D50S ribosomal protein L4polymer20522744.31UniProt (Q72I05)
UniProt (by SIFTS) (Q5SHN9)
Pfam (PF00573)
In PDB		Thermus thermophilus
7E50S ribosomal protein L5polymer18221075.61UniProt (Q72I16)
UniProt (by SIFTS) (Q5SHQ0)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Thermus thermophilus
8F50S ribosomal protein L6polymer18019568.91UniProt (Q72I19)
UniProt (by SIFTS) (P0DOY8)
Pfam (PF00347)
In PDB		Thermus thermophilus
9G50S ribosomal protein L9polymer14816436.21UniProt (Q72GV5)
UniProt (by SIFTS) (Q5SLQ1)
Pfam (PF01281)
Pfam (PF03948)
In PDB		Thermus thermophilus
10H50S ribosomal protein L13polymer16318534.01UniProt (Q72IN1)
UniProt (by SIFTS) (P60488)
Pfam (PF00572)
In PDB		Thermus thermophilus
11I50S ribosomal protein L14polymer12213309.61UniProt (Q72I14)
UniProt (by SIFTS) (Q5SHP8)
Pfam (PF00238)
In PDB		Thermus thermophilus
12J50S ribosomal protein L15polymer15016319.11UniProt (Q72I23)
UniProt (by SIFTS) (Q5SHQ7)
Pfam (PF00828)
In PDB		Thermus thermophilus
13K50S ribosomal protein L16polymer14115977.91UniProt (Q72I11)
UniProt (by SIFTS) (P60489)
Pfam (PF00252)
In PDB		Thermus thermophilus
14L50S ribosomal protein L17polymer11813750.11UniProt (Q72I33)
UniProt (by SIFTS) (Q9Z9H5)
Pfam (PF01196)
In PDB		Thermus thermophilus
15M50S ribosomal protein L18polymer11212639.81UniProt (Q72I20)
UniProt (by SIFTS) (Q5SHQ4)
Pfam (PF00861)
In PDB		Thermus thermophilus
16N50S ribosomal protein L19polymer14617217.91UniProt (Q72JU9)
UniProt (by SIFTS) (P60490)
Pfam (PF01245)
In PDB		Thermus thermophilus
17O50S ribosomal protein L20polymer11813779.31UniProt (Q72L76)
UniProt (by SIFTS) (P60491)
Pfam (PF00453)
In PDB		Thermus thermophilus
18P50S ribosomal protein L21polymer10111069.21UniProt (Q72HR2)
UniProt (by SIFTS) (P60492)
Pfam (PF00829)
In PDB		Thermus thermophilus
19Q50S ribosomal protein L22polymer11312808.11UniProt (Q72I09)
UniProt (by SIFTS) (Q5SHP3)
Pfam (PF00237)
In PDB		Thermus thermophilus
20R50S ribosomal protein L23polymer9610759.81UniProt (Q72I06)
UniProt (by SIFTS) (Q5SHP0)
Pfam (PF00276)
In PDB		Thermus thermophilus
21S50S ribosomal protein L24polymer11012085.61UniProt (Q72I15)
UniProt (by SIFTS) (Q5SHP9)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Thermus thermophilus
22T50S ribosomal protein L25polymer20623238.61UniProt (Q72IA7)
UniProt (by SIFTS) (Q5SHZ1)
Pfam (PF01386)
Pfam (PF14693)
In PDB		Thermus thermophilus
23U50S ribosomal protein L27polymer859501.11UniProt (Q72HR3)
UniProt (by SIFTS) (P60493)
Pfam (PF01016)
In PDB		Thermus thermophilus
24V50S ribosomal protein L28polymer9811032.21UniProt (Q72G84)
UniProt (by SIFTS) (P60494)
Pfam (PF00830)
In PDB		Thermus thermophilus
25W50S ribosomal protein L29polymer728670.31UniProt (Q72I12)
UniProt (by SIFTS) (Q5SHP6)
Pfam (PF00831)
In PDB		Thermus thermophilus
26X50S ribosomal protein L30polymer606799.11UniProt (Q72I22)
UniProt (by SIFTS) (Q5SHQ6)
Pfam (PF00327)
In PDB		Thermus thermophilus
27Y50S ribosomal protein L32polymer606734.11UniProt (P62652)
UniProt (by SIFTS) (P80339)
Pfam (PF01783)
In PDB		Thermus thermophilus
28Z50S ribosomal protein L34polymer496132.41UniProt (P80340)
Pfam (PF00468)
In PDB		Thermus thermophilus
29a50S ribosomal protein L35polymer657506.21UniProt (Q72L77)
UniProt (by SIFTS) (Q5SKU1)
Pfam (PF01632)
In PDB		Thermus thermophilus
30b50S ribosomal protein L36polymer374435.41UniProt (Q72I28)
UniProt (by SIFTS) (Q5SHR2)
Pfam (PF00444)
In PDB		Thermus thermophilus
31y16S SMALL SUBUNIT RIBOSOMAL RNApolymer1522494210.81GenBank (155076)Thermus thermophilus
32zP-site PHE-tRNApolymer7624649.91GenBank (174422)Escherichia coli
330E-TRNApolymer7624502.61Thermus thermophilus
341MRNApolymer103146.91
35c30S ribosomal protein S2polymer25629317.71UniProt (P62662)
UniProt (by SIFTS) (P80371)
Pfam (PF00318)
In PDB		Thermus thermophilus
36d30S ribosomal protein S3polymer23926751.11UniProt (P62663)
UniProt (by SIFTS) (P80372)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Thermus thermophilus
37e30S ribosomal protein S4polymer20924373.41UniProt (P62664)
UniProt (by SIFTS) (P80373)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Thermus thermophilus
38f30S ribosomal protein S5polymer16217583.41UniProt (P62665)
UniProt (by SIFTS) (Q5SHQ5)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Thermus thermophilus
39g30S ribosomal protein S6polymer10111988.81UniProt (P62666)
UniProt (by SIFTS) (Q5SLP8)
Pfam (PF01250)
In PDB		Thermus thermophilus
40h30S ribosomal protein S7polymer15618051.01UniProt (P62667)
UniProt (by SIFTS) (P17291)
Pfam (PF00177)
In PDB		Thermus thermophilus
41i30S ribosomal protein S8polymer13815868.61UniProt (P62668)
UniProt (by SIFTS) (P0DOY9)
Pfam (PF00410)
In PDB		Thermus thermophilus
42j30S ribosomal protein S9polymer12814429.71UniProt (P62669)
UniProt (by SIFTS) (P80374)
Pfam (PF00380)
In PDB		Thermus thermophilus
43k30S ribosomal protein S10polymer10511955.01UniProt (P62653)
UniProt (by SIFTS) (Q5SHN7)
Pfam (PF00338)
In PDB		Thermus thermophilus
44l30S ribosomal protein S11polymer12913737.91UniProt (P62654)
UniProt (by SIFTS) (P80376)
Pfam (PF00411)
In PDB		Thermus thermophilus
45m30S ribosomal protein S12polymer13214637.41UniProt (P61941)
UniProt (by SIFTS) (Q5SHN3)
Pfam (PF00164)
In PDB		Thermus thermophilus
46n30S ribosomal protein S13polymer12614338.91UniProt (P62655)
UniProt (by SIFTS) (P80377)
Pfam (PF00416)
In PDB		Thermus thermophilus
47o30S ribosomal protein S14polymer617158.71UniProt (P62656)
UniProt (by SIFTS) (P0DOY6)
Pfam (PF00253)
In PDB		Thermus thermophilus
48p30S ribosomal protein S15polymer8910578.41UniProt (P62657)
Pfam (PF00312)
UniProt (by SIFTS) (Q5SJ76)
In PDB		Thermus thermophilus
49q30S ribosomal protein S16polymer8810410.01UniProt (P62238)
Pfam (PF00886)
UniProt (by SIFTS) (Q5SJH3)
In PDB		Thermus thermophilus
50r30S ribosomal protein S17polymer10512324.71UniProt (P62658)
Pfam (PF00366)
UniProt (by SIFTS) (P0DOY7)
In PDB		Thermus thermophilus
51s30S ribosomal protein S18polymer8810258.31UniProt (P62659)
Pfam (PF01084)
UniProt (by SIFTS) (Q5SLQ0)
In PDB		Thermus thermophilus
52t30S ribosomal protein S19polymer9310605.51UniProt (P62660)
Pfam (PF00203)
UniProt (by SIFTS) (Q5SHP2)
In PDB		Thermus thermophilus
53u30S ribosomal protein S20polymer10611722.11UniProt (P62661)
Pfam (PF01649)
UniProt (by SIFTS) (P80380)
In PDB		Thermus thermophilus
54v30S ribosomal protein Thxpolymer273350.01UniProt (P62613)
Pfam (PF17070)
UniProt (by SIFTS) (Q5SIH3)
In PDB		Thermus thermophilus
Sequence modifications
y: 0 - 1544 (GenBank: 155076)
PDBExternal DatabaseDetails
G 450C 1101conflict
Psu 516U 1145modified residue
7mg 527G 1156modified residue
M2g 966G 1589modified residue
5mc 967C 1590modified residue
2mg 1207G 1834modified residue
5mc 1400C 2028modified residue
4oc 1402C 2030modified residue
5mc 1404C 2032modified residue
5mc 1407C 2035modified residue
Ur3 1498U 2121modified residue
Ma6 1518A 2141modified residue
Ma6 1519A 2142modified residue
z: 1 - 76 (GenBank: 174422)
PDBExternal DatabaseDetails
4su 8U 8modified residue
H2u 16U 16modified residue
H2u 20U 20modified residue
Psu 32U 32modified residue
Mia 37A 37modified residue
Psu 39U 39modified residue
7mg 46G 46modified residue
5mu 54U 54modified residue
Psu 55U 55modified residue
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains54
Total formula weight2224699.4
All*Total formula weight2224699.4
*Water molecules are not included.

221716

PDB entries from 2024-06-26

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