4V4I
Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.
This is a non-PDB format compatible entry.
Replaces: 1VS9Replaces: 2I1CEntity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (w) | 23S LARGE SUBUNIT RIBOSOMAL RNA | polymer | 2889 | 939562.2 | 1 | Thermus thermophilus | ||
| 2 | B (x) | 5S LARGE SUBUNIT RIBOSOMAL RNA | polymer | 121 | 39211.4 | 1 | GenBank (48271) | Thermus thermophilus | |
| 3 | C (A) | 50S ribosomal protein L1 | polymer | 229 | 24867.7 | 1 | UniProt (Q72GV9) Pfam (PF00687) UniProt (by SIFTS) (Q5SLP7) | Thermus thermophilus | |
| 4 | D (B) | 50S ribosomal protein L2 | polymer | 276 | 30532.6 | 1 | UniProt (Q72I07) Pfam (PF00181) Pfam (PF03947) UniProt (by SIFTS) (P60405) | Thermus thermophilus | |
| 5 | E (C) | 50S ribosomal protein L3 | polymer | 206 | 22450.2 | 1 | UniProt (Q72I04) Pfam (PF00297) UniProt (by SIFTS) (Q5SHN8) | Thermus thermophilus | |
| 6 | F (D) | 50S ribosomal protein L4 | polymer | 205 | 22744.3 | 1 | UniProt (Q72I05) Pfam (PF00573) UniProt (by SIFTS) (Q5SHN9) | Thermus thermophilus | |
| 7 | G (E) | 50S ribosomal protein L5 | polymer | 182 | 21075.6 | 1 | UniProt (Q72I16) Pfam (PF00281) Pfam (PF00673) UniProt (by SIFTS) (Q5SHQ0) | Thermus thermophilus | |
| 8 | H (F) | 50S ribosomal protein L6 | polymer | 180 | 19568.9 | 1 | UniProt (Q72I19) Pfam (PF00347) UniProt (by SIFTS) (P0DOY8) | Thermus thermophilus | |
| 9 | I (G) | 50S ribosomal protein L9 | polymer | 148 | 16436.2 | 1 | UniProt (Q72GV5) Pfam (PF01281) Pfam (PF03948) UniProt (by SIFTS) (Q5SLQ1) | Thermus thermophilus | |
| 10 | J (H) | 50S ribosomal protein L13 | polymer | 163 | 18534.0 | 1 | UniProt (Q72IN1) Pfam (PF00572) UniProt (by SIFTS) (P60488) | Thermus thermophilus | |
| 11 | K (I) | 50S ribosomal protein L14 | polymer | 122 | 13309.6 | 1 | UniProt (Q72I14) Pfam (PF00238) UniProt (by SIFTS) (Q5SHP8) | Thermus thermophilus | |
| 12 | L (J) | 50S ribosomal protein L15 | polymer | 150 | 16319.1 | 1 | UniProt (Q72I23) Pfam (PF00828) UniProt (by SIFTS) (Q5SHQ7) | Thermus thermophilus | |
| 13 | M (K) | 50S ribosomal protein L16 | polymer | 141 | 15977.9 | 1 | UniProt (Q72I11) Pfam (PF00252) UniProt (by SIFTS) (P60489) | Thermus thermophilus | |
| 14 | N (L) | 50S ribosomal protein L17 | polymer | 118 | 13750.1 | 1 | UniProt (Q72I33) Pfam (PF01196) UniProt (by SIFTS) (Q9Z9H5) | Thermus thermophilus | |
| 15 | O (M) | 50S ribosomal protein L18 | polymer | 112 | 12639.8 | 1 | UniProt (Q72I20) Pfam (PF00861) UniProt (by SIFTS) (Q5SHQ4) | Thermus thermophilus | |
| 16 | P (N) | 50S ribosomal protein L19 | polymer | 146 | 17217.9 | 1 | UniProt (Q72JU9) Pfam (PF01245) UniProt (by SIFTS) (P60490) | Thermus thermophilus | |
| 17 | Q (O) | 50S ribosomal protein L20 | polymer | 118 | 13779.3 | 1 | UniProt (Q72L76) Pfam (PF00453) UniProt (by SIFTS) (P60491) | Thermus thermophilus | |
| 18 | R (P) | 50S ribosomal protein L21 | polymer | 101 | 11069.2 | 1 | UniProt (Q72HR2) Pfam (PF00829) UniProt (by SIFTS) (P60492) | Thermus thermophilus | |
| 19 | S (Q) | 50S ribosomal protein L22 | polymer | 113 | 12808.1 | 1 | UniProt (Q72I09) Pfam (PF00237) UniProt (by SIFTS) (Q5SHP3) | Thermus thermophilus | |
| 20 | T (R) | 50S ribosomal protein L23 | polymer | 96 | 10759.8 | 1 | UniProt (Q72I06) Pfam (PF00276) UniProt (by SIFTS) (Q5SHP0) | Thermus thermophilus | |
| 21 | U (S) | 50S ribosomal protein L24 | polymer | 110 | 12085.6 | 1 | UniProt (Q72I15) Pfam (PF00467) Pfam (PF17136) UniProt (by SIFTS) (Q5SHP9) | Thermus thermophilus | |
| 22 | V (T) | 50S ribosomal protein L25 | polymer | 206 | 23238.6 | 1 | UniProt (Q72IA7) Pfam (PF01386) Pfam (PF14693) UniProt (by SIFTS) (Q5SHZ1) | Thermus thermophilus | |
| 23 | W (U) | 50S ribosomal protein L27 | polymer | 85 | 9501.1 | 1 | UniProt (Q72HR3) Pfam (PF01016) UniProt (by SIFTS) (P60493) | Thermus thermophilus | |
| 24 | X (V) | 50S ribosomal protein L28 | polymer | 98 | 11032.2 | 1 | UniProt (Q72G84) Pfam (PF00830) UniProt (by SIFTS) (P60494) | Thermus thermophilus | |
| 25 | Y (W) | 50S ribosomal protein L29 | polymer | 72 | 8670.3 | 1 | UniProt (Q72I12) Pfam (PF00831) UniProt (by SIFTS) (Q5SHP6) | Thermus thermophilus | |
| 26 | Z (X) | 50S ribosomal protein L30 | polymer | 60 | 6799.1 | 1 | UniProt (Q72I22) Pfam (PF00327) UniProt (by SIFTS) (Q5SHQ6) | Thermus thermophilus | |
| 27 | AA (Y) | 50S ribosomal protein L32 | polymer | 60 | 6734.1 | 1 | UniProt (P62652) Pfam (PF01783) UniProt (by SIFTS) (P80339) | Thermus thermophilus | |
| 28 | BA (Z) | 50S ribosomal protein L34 | polymer | 49 | 6132.4 | 1 | UniProt (P80340) Pfam (PF00468) | Thermus thermophilus | |
| 29 | CA (a) | 50S ribosomal protein L35 | polymer | 65 | 7506.2 | 1 | UniProt (Q72L77) Pfam (PF01632) UniProt (by SIFTS) (Q5SKU1) | Thermus thermophilus | |
| 30 | DA (b) | 50S ribosomal protein L36 | polymer | 37 | 4435.4 | 1 | UniProt (Q72I28) Pfam (PF00444) UniProt (by SIFTS) (Q5SHR2) | Thermus thermophilus | |
| 31 | EA (y) | 16S SMALL SUBUNIT RIBOSOMAL RNA | polymer | 1522 | 494210.8 | 1 | GenBank (155076) | Thermus thermophilus | |
| 32 | FA (z) | P-site PHE-tRNA | polymer | 76 | 24649.9 | 1 | GenBank (174422) | Escherichia coli | |
| 33 | GA (0) | E-TRNA | polymer | 76 | 24502.6 | 1 | Thermus thermophilus | ||
| 34 | HA (1) | MRNA | polymer | 10 | 3146.9 | 1 | |||
| 35 | IA (c) | 30S ribosomal protein S2 | polymer | 256 | 29317.7 | 1 | UniProt (P62662) Pfam (PF00318) UniProt (by SIFTS) (P80371) | Thermus thermophilus | |
| 36 | JA (d) | 30S ribosomal protein S3 | polymer | 239 | 26751.1 | 1 | UniProt (P62663) Pfam (PF07650) Pfam (PF00189) UniProt (by SIFTS) (P80372) | Thermus thermophilus | |
| 37 | KA (e) | 30S ribosomal protein S4 | polymer | 209 | 24373.4 | 1 | UniProt (P62664) Pfam (PF00163) Pfam (PF01479) UniProt (by SIFTS) (P80373) | Thermus thermophilus | |
| 38 | LA (f) | 30S ribosomal protein S5 | polymer | 162 | 17583.4 | 1 | UniProt (P62665) Pfam (PF00333) Pfam (PF03719) UniProt (by SIFTS) (Q5SHQ5) | Thermus thermophilus | |
| 39 | MA (g) | 30S ribosomal protein S6 | polymer | 101 | 11988.8 | 1 | UniProt (P62666) Pfam (PF01250) UniProt (by SIFTS) (Q5SLP8) | Thermus thermophilus | |
| 40 | NA (h) | 30S ribosomal protein S7 | polymer | 156 | 18051.0 | 1 | UniProt (P62667) Pfam (PF00177) UniProt (by SIFTS) (P17291) | Thermus thermophilus | |
| 41 | OA (i) | 30S ribosomal protein S8 | polymer | 138 | 15868.6 | 1 | UniProt (P62668) Pfam (PF00410) UniProt (by SIFTS) (P0DOY9) | Thermus thermophilus | |
| 42 | PA (j) | 30S ribosomal protein S9 | polymer | 128 | 14429.7 | 1 | UniProt (P62669) Pfam (PF00380) UniProt (by SIFTS) (P80374) | Thermus thermophilus | |
| 43 | QA (k) | 30S ribosomal protein S10 | polymer | 105 | 11955.0 | 1 | UniProt (P62653) Pfam (PF00338) UniProt (by SIFTS) (Q5SHN7) | Thermus thermophilus | |
| 44 | RA (l) | 30S ribosomal protein S11 | polymer | 129 | 13737.9 | 1 | UniProt (P62654) Pfam (PF00411) UniProt (by SIFTS) (P80376) | Thermus thermophilus | |
| 45 | SA (m) | 30S ribosomal protein S12 | polymer | 132 | 14637.4 | 1 | UniProt (P61941) Pfam (PF00164) UniProt (by SIFTS) (Q5SHN3) | Thermus thermophilus | |
| 46 | TA (n) | 30S ribosomal protein S13 | polymer | 126 | 14338.9 | 1 | UniProt (P62655) Pfam (PF00416) UniProt (by SIFTS) (P80377) | Thermus thermophilus | |
| 47 | UA (o) | 30S ribosomal protein S14 | polymer | 61 | 7158.7 | 1 | UniProt (P62656) Pfam (PF00253) UniProt (by SIFTS) (P0DOY6) | Thermus thermophilus | |
| 48 | VA (p) | 30S ribosomal protein S15 | polymer | 89 | 10578.4 | 1 | UniProt (P62657) Pfam (PF00312) UniProt (by SIFTS) (Q5SJ76) | Thermus thermophilus | |
| 49 | WA (q) | 30S ribosomal protein S16 | polymer | 88 | 10410.0 | 1 | UniProt (P62238) Pfam (PF00886) UniProt (by SIFTS) (Q5SJH3) | Thermus thermophilus | |
| 50 | XA (r) | 30S ribosomal protein S17 | polymer | 105 | 12324.7 | 1 | UniProt (P62658) Pfam (PF00366) UniProt (by SIFTS) (P0DOY7) | Thermus thermophilus | |
| 51 | YA (s) | 30S ribosomal protein S18 | polymer | 88 | 10258.3 | 1 | UniProt (P62659) Pfam (PF01084) UniProt (by SIFTS) (Q5SLQ0) | Thermus thermophilus | |
| 52 | ZA (t) | 30S ribosomal protein S19 | polymer | 93 | 10605.5 | 1 | UniProt (P62660) Pfam (PF00203) UniProt (by SIFTS) (Q5SHP2) | Thermus thermophilus | |
| 53 | AB (u) | 30S ribosomal protein S20 | polymer | 106 | 11722.1 | 1 | UniProt (P62661) Pfam (PF01649) UniProt (by SIFTS) (P80380) | Thermus thermophilus | |
| 54 | BB (v) | 30S ribosomal protein Thx | polymer | 27 | 3350.0 | 1 | UniProt (P62613) Pfam (PF17070) UniProt (by SIFTS) (Q5SIH3) | Thermus thermophilus |
Sequence modifications
y: 0 - 1544 (GenBank: 155076)
z: 1 - 76 (GenBank: 174422)
| PDB | External Database | Details |
|---|---|---|
| G 450 | C 1101 | conflict |
| Psu 516 | U 1145 | modified residue |
| 7mg 527 | G 1156 | modified residue |
| M2g 966 | G 1589 | modified residue |
| 5mc 967 | C 1590 | modified residue |
| 2mg 1207 | G 1834 | modified residue |
| 5mc 1400 | C 2028 | modified residue |
| 4oc 1402 | C 2030 | modified residue |
| 5mc 1404 | C 2032 | modified residue |
| 5mc 1407 | C 2035 | modified residue |
| Ur3 1498 | U 2121 | modified residue |
| Ma6 1518 | A 2141 | modified residue |
| Ma6 1519 | A 2142 | modified residue |
| PDB | External Database | Details |
|---|---|---|
| 4su 8 | U 8 | modified residue |
| H2u 16 | U 16 | modified residue |
| H2u 20 | U 20 | modified residue |
| Psu 32 | U 32 | modified residue |
| Mia 37 | A 37 | modified residue |
| Psu 39 | U 39 | modified residue |
| 7mg 46 | G 46 | modified residue |
| 5mu 54 | U 54 | modified residue |
| Psu 55 | U 55 | modified residue |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 54 |
| Total formula weight | 2224699.4 | |
| All* | Total formula weight | 2224699.4 |
