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4U0M

Structure of the Vibrio cholerae di-nucleotide cyclase (DncV) mutant D193N in complex with ATP, GTP and 5MTHFGLU2

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
Cyclic AMP-GMP synthasepolymer42748824.42UniProt (Q9KVG7)
Pfam (PF21654)
Pfam (PF21713)
Vibrio cholerae El Tor N16961c-AMP-GMP synthase,Dinucleotide cyclase DncV
2C, G
(A, B)
GUANOSINE-5'-TRIPHOSPHATEnon-polymer523.22Chemie (GTP)
PubChem (177679032)
PubChem (135400627)
PubChem (135487750)
PubChem (136088935)
PubChem (136803486)
PubChem (135398633)
PubChem (135544356)
PubChem (135547949)
PubChem (135600366)
PubChem (135749822)
PubChem (136005188)
PubChem (136073923)
PubChem (136240914)
PubChem (136664747)
PubChem (136772743)
PubChem (136772744)
PubChem (136803487)
PubChem (137286749)
PubChem (164715984)
PubChem (171699466)
3D, H
(A, B)
ADENOSINE-5'-TRIPHOSPHATEnon-polymer507.22Chemie (ATP)
4E, I
(A, B)
MAGNESIUM IONnon-polymer24.32Chemie (MG)
PubChem (888)
5F
(A)
N-[4-({[(6S)-2-amino-5-methyl-4-oxo-1,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-gamma-glutamyl-L-glutamic acidnon-polymer588.61Chemie (TLL)
6J, K
(A, B)
waterwater18.0377Chemie (HOH)
Sequence modifications
A, B: 1 - 419 (UniProt: Q9KVG7)
PDBExternal DatabaseDetails
Asn 193Asp 193engineered mutation
Leu 420-expression tag
Glu 421-expression tag
His 422-expression tag
His 423-expression tag
His 424-expression tag
His 425-expression tag
His 426-expression tag
His 427-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight97648.8
Non-Polymers*Number of molecules7
Total formula weight2697.9
All*Total formula weight100346.7
*Water molecules are not included.

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PDB entries from 2026-05-06

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