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4QBR

Crystal structure of DNMT3a ADD domain G550D mutant bound to H3 peptide

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, C
(A, C)
DNA (cytosine-5)-methyltransferase 3Apolymer13715678.02UniProt (Q9Y6K1)
Pfam (PF17980)
Pfam (PF21255)
Homo sapiens (human)Dnmt3a, DNA methyltransferase HsaIIIA, DNA MTase HsaIIIA, M.HsaIIIA
2B, D
(P, E)
Histone H3polymer7776.92UniProt (by SIFTS) (P68431)Homo sapiens
3E, F, G, H, I...
(A, C)
ZINC IONnon-polymer65.46Chemie (ZN)
4K, L, M, N
(A, P, C, E)
waterwater18.0216Chemie (HOH)
Sequence modifications
A, C: 476 - 611 (UniProt: Q9Y6K1)
PDBExternal DatabaseDetails
Ser 475-expression tag
Asp 550Gly 550engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight32909.8
Non-Polymers*Number of molecules6
Total formula weight392.5
All*Total formula weight33302.3
*Water molecules are not included.

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PDB entries from 2025-07-30

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