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4QBR

Crystal structure of DNMT3a ADD domain G550D mutant bound to H3 peptide

Functional Information from GO Data
ChainGOidnamespacecontents
A0006306biological_processDNA methylation
A0010468biological_processregulation of gene expression
C0006306biological_processDNA methylation
C0010468biological_processregulation of gene expression
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 701
ChainResidue
ACYS549
ACYS554
ACYS583
ACYS586

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 702
ChainResidue
ACYS537
ACYS540
ACYS559
ACYS562

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 703
ChainResidue
ACYS497
ACYS514
ACYS517
ACYS494

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN C 701
ChainResidue
CCYS549
CCYS554
CCYS583
CCYS586

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN C 702
ChainResidue
CCYS537
CCYS540
CCYS559
CCYS562

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN C 703
ChainResidue
CCYS494
CCYS497
CCYS514
CCYS517

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsMOD_RES: Citrulline; alternate => ECO:0000269|PubMed:16567635
ChainResidueDetails
PARG2
EARG2

site_idSWS_FT_FI2
Number of Residues2
DetailsMOD_RES: Phosphothreonine; by HASPIN and VRK1 => ECO:0000269|PubMed:15681610, ECO:0000269|PubMed:16185088, ECO:0000269|PubMed:31527692
ChainResidueDetails
PTHR3
ETHR3

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: N6-methyllysine; alternate => ECO:0000269|PubMed:16267050, ECO:0000269|PubMed:16457588, ECO:0000269|PubMed:17194708
ChainResidueDetails
PLYS4
ELYS4

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: 5-glutamyl serotonin; alternate => ECO:0000269|PubMed:30867594
ChainResidueDetails
PGLN5
EGLN5

site_idSWS_FT_FI5
Number of Residues2
DetailsMOD_RES: Phosphothreonine; by PKC => ECO:0000269|PubMed:20228790
ChainResidueDetails
PTHR6
ETHR6

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PDB entries from 2024-07-24

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