Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

4OAK

Crystal structure of vancomycin resistance D,D-dipeptidase/D,D-pentapeptidase VanXYc D59S mutant in complex with D-Alanine-D-Alanine and copper (II)

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
D,D-dipeptidase/D,D-carboxypeptidasepolymer21124766.02UniProt (Q9JN36)
Pfam (PF02557)
Enterococcus gallinarumD,D-dipeptidase/D,D-carboxypeptidase VanXYc
2C, N
(A, B)
COPPER (II) IONnon-polymer63.52Chemie (CU)
3D, E, O, P
(A, B)
D-ALANINEnon-polymer89.14Chemie (DAL)
4F, Q, R
(A, B)
SULFATE IONnon-polymer96.13Chemie (SO4)
5G
(A)
MAGNESIUM IONnon-polymer24.31Chemie (MG)
6H, I, J, K, S...
(A, B)
CHLORIDE IONnon-polymer35.56Chemie (CL)
7L, M, U, V
(A, B)
3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOLnon-polymer634.84Chemie (PE3)
8W, X
(A, B)
waterwater18.0324Chemie (HOH)
Sequence modifications
A, B: 1 - 190 (UniProt: Q9JN36)
PDBExternal DatabaseDetails
Met -20-initiating methionine
Gly -19-expression tag
Ser -18-expression tag
Ser -17-expression tag
His -16-expression tag
His -15-expression tag
His -14-expression tag
His -13-expression tag
His -12-expression tag
His -11-expression tag
Ser -10-expression tag
Ser -9-expression tag
Gly -8-expression tag
Arg -7-expression tag
Glu -6-expression tag
Asn -5-expression tag
Leu -4-expression tag
Tyr -3-expression tag
Phe -2-expression tag
Gln -1-expression tag
Gly 0-expression tag
Ser 59Asp 59engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight49531.9
Non-Polymers*Number of molecules20
Total formula weight3547.7
All*Total formula weight53079.6
*Water molecules are not included.

239149

PDB entries from 2025-07-23

PDB statisticsPDBj update infoContact PDBjnumon