4LT5
Structure of a Naegleria Tet-like dioxygenase in complex with 5-methylcytosine DNA
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Naegleria Tet-like dioxygenase | polymer | 327 | 37374.1 | 1 | UniProt (D2W6T1) In PDB | Naegleria gruberi (Amoeba) | |
2 | B | DNA | polymer | 14 | 4293.8 | 1 | |||
3 | C | DNA | polymer | 14 | 4293.8 | 1 | |||
4 | A | MANGANESE (II) ION | non-polymer | 54.9 | 1 | Chemie (MN) | |||
5 | A, C | 1,2-ETHANEDIOL | non-polymer | 62.1 | 9 | Chemie (EDO) | |||
6 | A | SULFATE ION | non-polymer | 96.1 | 4 | Chemie (SO4) | |||
7 | A | N-OXALYLGLYCINE | non-polymer | 147.1 | 1 | Chemie (OGA) | |||
8 | water | water | 18.0 | 100 | Chemie (HOH) |
Sequence modifications
A: 2 - 321 (UniProt: D2W6T1)
PDB | External Database | Details |
---|---|---|
Met -5 | - | expression tag |
His -4 | - | expression tag |
His -3 | - | expression tag |
His -2 | - | expression tag |
His -1 | - | expression tag |
His 0 | - | expression tag |
His 1 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 3 |
Total formula weight | 45961.8 | |
Non-Polymers* | Number of molecules | 15 |
Total formula weight | 1144.9 | |
All* | Total formula weight | 47106.7 |