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4LT5

Structure of a Naegleria Tet-like dioxygenase in complex with 5-methylcytosine DNA

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 22-BM
Synchrotron siteAPS
Beamline22-BM
Temperature [K]100
Detector technologyCCD
Collection date2012-11-16
DetectorMARMOSAIC 225 mm CCD
Spacegroup nameI 21 21 21
Unit cell lengths83.954, 108.648, 166.384
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution29.547 - 2.893
R-factor0.1944
Rwork0.193
R-free0.21540
Structure solution methodSAD
RMSD bond length0.006
RMSD bond angle0.675
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwareSGXPRO
Refinement softwarePHENIX ((phenix.refine: 1.8.2_1309))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.0002.990
High resolution limit [Å]2.8902.890
Rmerge0.0770.783
Number of reflections17328
<I/σ(I)>22.82.1
Completeness [%]99.999.5
Redundancy6.46.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP5.52892 M ammonium sulfate, 0.1 M BisTris-HCl, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K
2VAPOR DIFFUSION, SITTING DROP828920% (w/v) polyethylene glycol 3350, and 0.2 M sodium citrate, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 289K

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