4LIU

Structure of YcfD, a Ribosomal oxygenase from Escherichia coli.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A (A)	50S ribosomal protein L16 arginine hydroxylase	polymer	407	46834.2	1	UniProt (P27431) Pfam (PF08007) Pfam (PF20514)	Escherichia coli	Ribosomal oxygenase YcfD, ROX
2	B (A)	TRIS(HYDROXYETHYL)AMINOMETHANE	non-polymer		163.2	1	Chemie (TAM)
3	C (A)	PHOSPHATE ION	non-polymer		95.0	1	Chemie (PO4)
4	D (A)	water	water		18.0	113	Chemie (HOH)

Sequence modifications

A: 36 - 407 (UniProt: P27431)

PDB	External Database	Details
Mse 1	-	expression tag
Gly 2	-	expression tag
Ser 3	-	expression tag
Ser 4	-	expression tag
His 5	-	expression tag
His 6	-	expression tag
His 7	-	expression tag
His 8	-	expression tag
His 9	-	expression tag
His 10	-	expression tag
Ser 11	-	expression tag
Ser 12	-	expression tag
Gly 13	-	expression tag
Leu 14	-	expression tag
Val 15	-	expression tag
Pro 16	-	expression tag
Arg 17	-	expression tag
Gly 18	-	expression tag
Ser 19	-	expression tag
His 20	-	expression tag
Mse 21	-	expression tag
Ala 22	-	expression tag
Ser 23	-	expression tag
Mse 24	-	expression tag
Thr 25	-	expression tag
Gly 26	-	expression tag
Gly 27	-	expression tag
Glu 28	-	expression tag
Glu 29	-	expression tag
Mse 30	-	expression tag
Gly 31	-	expression tag
Arg 32	-	expression tag
Gly 33	-	expression tag
Ser 34	-	expression tag
Mse 35	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	1
	Total formula weight	46834.2
Non-Polymers*	Number of molecules	2
	Total formula weight	258.2
All*	Total formula weight	47092.3

*Water molecules are not included.