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4LIU

Structure of YcfD, a Ribosomal oxygenase from Escherichia coli.

Functional Information from GO Data
ChainGOidnamespacecontents
A0005515molecular_functionprotein binding
A0008198molecular_functionferrous iron binding
A0016706molecular_function2-oxoglutarate-dependent dioxygenase activity
A0042803molecular_functionprotein homodimerization activity
A0043687biological_processpost-translational protein modification
A0046872molecular_functionmetal ion binding
A0051213molecular_functiondioxygenase activity
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE TAM A 501
ChainResidue
ALEU41
AASN42
AASP45
AGLY407
AHOH704

site_idAC2
Number of Residues10
DetailsBINDING SITE FOR RESIDUE PO4 A 502
ChainResidue
ATRP176
AHOH607
AHOH613
AHOH671
AHOH678
AHOH708
ALEU116
AMSE146
ASER148
AARG174

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues3
DetailsBINDING: BINDING => ECO:0000305|PubMed:24814345
ChainResidueDetails
ASER148
AARG174
AHIS221

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:24530688
ChainResidueDetails
AHIS159
AASP161

226707

PDB entries from 2024-10-30

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