4F1H
Crystal structure of TDP2 from Danio rerio complexed with a single strand DNA
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | C | DNA (5'-D(P*TP*GP*CP*AP*G)-3') | polymer | 5 | 1520.0 | 1 | |||
| 2 | A | Tyrosyl-DNA phosphodiesterase 2 | polymer | 250 | 28484.7 | 1 | UniProt (Q5XJA0) Pfam (PF03372) In PDB | Danio rerio (leopard danio zebra danio zebra fish) | Tyr-DNA phosphodiesterase 2, 5'-tyrosyl-DNA phosphodiesterase, 5'-Tyr-DNA phosphodiesterase, TRAF and TNF receptor-associated protein homolog |
| 3 | B | Tyrosyl-DNA phosphodiesterase 2 | polymer | 251 | 28613.8 | 1 | UniProt (Q5XJA0) Pfam (PF03372) In PDB | Danio rerio (leopard danio zebra danio zebra fish) | Tyr-DNA phosphodiesterase 2, 5'-tyrosyl-DNA phosphodiesterase, 5'-Tyr-DNA phosphodiesterase, TRAF and TNF receptor-associated protein homolog |
| 4 | C | PHOSPHATE ION | non-polymer | 95.0 | 1 | Chemie (PO4) | |||
| 5 | A, B | GLYCEROL | non-polymer | 92.1 | 4 | Chemie (GOL) | |||
| 6 | A | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) | |||
| 7 | water | water | 18.0 | 586 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 58618.6 | |
| Non-Polymers* | Number of molecules | 6 |
| Total formula weight | 487.7 | |
| All* | Total formula weight | 59106.3 |
