4ELM
Crystal structure of the mouse CD1d-lysosulfatide-Hy19.3 TCR complex
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, C | Antigen-presenting glycoprotein CD1d1 | polymer | 285 | 32632.7 | 2 | UniProt (P11609) Pfam (PF16497) Pfam (PF07654) In PDB | Mus musculus (mouse) | |
2 | B, D | Beta-2 microglobulin | polymer | 99 | 11660.4 | 2 | UniProt (Q91XJ8) Pfam (PF07654) UniProt (by SIFTS) (P01887) In PDB | Mus musculus (mouse) | Uncharacterized protein |
3 | E, G | Hy19.3 TCR alpha chain (mouse variable domain, human constant domain) | polymer | 208 | 23209.5 | 2 | Mus musculus (mouse) | ||
4 | F, H | Hy19.3 TCR beta chain (mouse variable domain, human constant domain) | polymer | 244 | 27993.6 | 2 | Mus musculus (mouse) | ||
5 | I | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) | |||
6 | J | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 732.7 | 1 | In PDB GlyTouCan (G32152BH) | |||
7 | A, C | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 4 | Chemie (NAG) | |||
8 | A, C | (2S,3R,4E)-2-amino-3-hydroxyoctadec-4-en-1-yl 3-O-sulfo-beta-D-galactopyranoside | non-polymer | 541.7 | 2 | Chemie (SGF) | |||
9 | A, C | PALMITIC ACID | non-polymer | 256.4 | 2 | Chemie (PLM) |
Sequence modifications
A, C: 1 - 279 (UniProt: P11609)
PDB | External Database | Details |
---|---|---|
His 201 | Asp 219 | SEE REMARK 999 |
His 280 | - | expression tag |
His 281 | - | expression tag |
His 282 | - | expression tag |
His 283 | - | expression tag |
His 284 | - | expression tag |
His 285 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 8 |
Total formula weight | 190992.3 | |
Branched | Number of molecules | 2 |
Total formula weight | 1157.1 | |
Non-Polymers* | Number of molecules | 8 |
Total formula weight | 2481.1 | |
All* | Total formula weight | 194630.5 |