4A0B
Structure of hsDDB1-drDDB2 bound to a 16 bp CPD-duplex (pyrimidine at D-1 position) at 3.8 A resolution (CPD 4)
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, C | DNA DAMAGE-BINDING PROTEIN 1 | polymer | 1159 | 129352.9 | 2 | UniProt (Q16531) Pfam (PF10433) Pfam (PF03178) In PDB | HOMO SAPIENS (HUMAN) | |
2 | B, D | DNA DAMAGE-BINDING PROTEIN 2 | polymer | 382 | 43418.1 | 2 | UniProt (Q2YDS1) Pfam (PF00400) In PDB | DANIO RERIO (ZEBRAFISH) | DAMAGE-SPECIFIC DNA-BINDING PROTEIN 2 |
3 | G, I | 5'-D(*DGP*GP*TP*GP*AP*AP*AP*(TTD)P*AP*GP*CP*AP*GP*DGP)-3' | polymer | 15 | 5018.3 | 2 | synthetic construct | ||
4 | H, J | 5'-D(*CP*CP*TP*GP*CP*TP*CP*CP*TP*TP*TP*CP*AP*CP*CP*C)-3' | polymer | 16 | 4730.1 | 2 | synthetic construct |
Sequence modifications
A, C: 1 - 1140 (UniProt: Q16531)
B, D: 94 - 457 (UniProt: Q2YDS1)
PDB | External Database | Details |
---|---|---|
Met -18 | - | expression tag |
His -17 | - | expression tag |
His -16 | - | expression tag |
His -15 | - | expression tag |
His -14 | - | expression tag |
His -13 | - | expression tag |
His -12 | - | expression tag |
Val -11 | - | expression tag |
Asp -10 | - | expression tag |
Glu -9 | - | expression tag |
Asn -8 | - | expression tag |
Leu -7 | - | expression tag |
Tyr -6 | - | expression tag |
Phe -5 | - | expression tag |
Gln -4 | - | expression tag |
Gly -3 | - | expression tag |
Gly -2 | - | expression tag |
Gly -1 | - | expression tag |
Arg 0 | - | expression tag |
Ser 224 | Glu 224 | engineered mutation |
PDB | External Database | Details |
---|---|---|
Met 76 | - | expression tag |
His 77 | - | expression tag |
His 78 | - | expression tag |
His 79 | - | expression tag |
His 80 | - | expression tag |
His 81 | - | expression tag |
His 82 | - | expression tag |
Arg 83 | - | expression tag |
Arg 84 | - | expression tag |
Leu 85 | - | expression tag |
Val 86 | - | expression tag |
Pro 87 | - | expression tag |
Arg 88 | - | expression tag |
Gly 89 | - | expression tag |
Ser 90 | - | expression tag |
Gly 91 | - | expression tag |
Gly 92 | - | expression tag |
Arg 93 | - | expression tag |
Gln 180 | Leu 146 | variant |
Arg 214 | Trp 180 | variant |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 8 |
Total formula weight | 365038.6 | |
All* | Total formula weight | 365038.6 |