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3ZGZ

Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and toxic moiety from agrocin 84 (TM84) in aminoacylation-like conformation

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, DLEUCINE--TRNA LIGASEpolymer88099516.02UniProt (P07813)
Pfam (PF09334)
Pfam (PF13603)
Pfam (PF00133)
Pfam (PF08264)
In PDB
ESCHERICHIA COLILEUCYL-TRNA SYNTHETASE, LEURS
2B, ETRNA-LEU UAA ISOACCEPTORpolymer8828396.92ESCHERICHIA COLI K-12
3A, DZINC IONnon-polymer65.42Chemie (ZN)
4A, D[(2S,4S,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-oxolan-2-yl]methoxy-N-[(2S,3R)-4-methyl-2,3-bis(oxidanyl)pentanoyl]phosphonamidic acidnon-polymer460.42Chemie (84T)
5B, EMAGNESIUM IONnon-polymer24.37Chemie (MG)
6waterwater18.0369Chemie (HOH)
Sequence modifications
A, D: 1 - 860 (UniProt: P07813)
PDBExternal DatabaseDetails
Met -19-expression tag
Gly -18-expression tag
Ser -17-expression tag
Ser -16-expression tag
His -15-expression tag
His -14-expression tag
His -13-expression tag
His -12-expression tag
His -11-expression tag
His -10-expression tag
Ser -9-expression tag
Ser -8-expression tag
Gly -7-expression tag
Leu -6-expression tag
Val -5-expression tag
Pro -4-expression tag
Arg -3-expression tag
Gly -2-expression tag
Ser -1-expression tag
His 0-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight255825.8
Non-Polymers*Number of molecules11
Total formula weight1221.7
All*Total formula weight257047.5
*Water molecules are not included.

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PDB entries from 2024-07-10

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