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3SI8

Human DNA polymerase eta - DNA ternary complex with the 5'T of a CPD in the active site (TT2)

Replaces:  3MR4
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1ADNA polymerase etapolymer43548617.71UniProt (Q9Y253)
Pfam (PF00817)
Pfam (PF21704)
Pfam (PF11799)
In PDB
Homo sapiens (human)RAD30 homolog A, Xeroderma pigmentosum variant type protein
2TDNA (5'-D(*TP*A*AP*CP*(TTD)P*AP*TP*GP*AP*CP*GP*C)-3')polymer123950.61
3PDNA (5'-D(*TP*GP*CP*GP*TP*CP*AP*TP*A)-3')polymer92730.81
4A2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosinenon-polymer490.21Chemie (DZ4)
5AGLYCEROLnon-polymer92.18Chemie (GOL)
6A(2R,3S,5R)-5-(6-amino-9H-purin-9-yl)-tetrahydro-2-(hydroxymethyl)furan-3-olnon-polymer251.21Chemie (3D1)
7A2,3-DIHYDROXY-1,4-DITHIOBUTANEnon-polymer154.32Chemie (DTT)
8A1,2-ETHANEDIOLnon-polymer62.15Chemie (EDO)
9AMAGNESIUM IONnon-polymer24.32Chemie (MG)
10ACOBALT (II) IONnon-polymer58.91Chemie (CO)
11waterwater18.0126Chemie (HOH)
Sequence modifications
A: 1 - 432 (UniProt: Q9Y253)
PDBExternal DatabaseDetails
Gly -2-expression tag
Pro -1-expression tag
His 0-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains3
Total formula weight55299.1
Non-Polymers*Number of molecules20
Total formula weight2204.6
All*Total formula weight57503.7
*Water molecules are not included.

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PDB entries from 2024-05-15

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