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3R5F

Crystal structure of D-alanine-D-alnine ligase from Xanthomonas oryzae pv. oryzae with ATP

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
D-alanine--D-alanine ligase 1polymer38441757.51UniProt (Q2P8P8)
Pfam (PF01820)
Pfam (PF07478)
UniProt (by SIFTS) (Q5H614)
Xanthomonas oryzae pv. oryzaeD-Ala-D-Ala ligase 1, D-alanylalanine synthetase 1
2B
(A)
ADENOSINE-5'-TRIPHOSPHATEnon-polymer507.21Chemie (ATP)
3C
(A)
MAGNESIUM IONnon-polymer24.31Chemie (MG)
4D
(A)
waterwater18.0125Chemie (HOH)
Sequence modifications
A: 1 - 367 (UniProt: Q2P8P8)
PDBExternal DatabaseDetails
His -16-expression tag
His -15-expression tag
His -14-expression tag
His -13-expression tag
His -12-expression tag
His -11-expression tag
His -10-expression tag
Ser -9-expression tag
Ser -8-expression tag
Glu -7-expression tag
Asn -6-expression tag
Leu -5-expression tag
Tyr -4-expression tag
Phe -3-expression tag
Gln -2-expression tag
Gly -1-expression tag
His 0-expression tag
Val 327Met 327engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight41757.5
Non-Polymers*Number of molecules2
Total formula weight531.5
All*Total formula weight42289.0
*Water molecules are not included.

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PDB entries from 2024-11-13

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