3R5F
Crystal structure of D-alanine-D-alnine ligase from Xanthomonas oryzae pv. oryzae with ATP
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A (A) | D-alanine--D-alanine ligase 1 | polymer | 384 | 41757.5 | 1 | UniProt (Q2P8P8) Pfam (PF01820) Pfam (PF07478) UniProt (by SIFTS) (Q5H614) | Xanthomonas oryzae pv. oryzae | D-Ala-D-Ala ligase 1, D-alanylalanine synthetase 1 |
2 | B (A) | ADENOSINE-5'-TRIPHOSPHATE | non-polymer | 507.2 | 1 | Chemie (ATP) | |||
3 | C (A) | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) | |||
4 | D (A) | water | water | 18.0 | 125 | Chemie (HOH) |
Sequence modifications
A: 1 - 367 (UniProt: Q2P8P8)
PDB | External Database | Details |
---|---|---|
His -16 | - | expression tag |
His -15 | - | expression tag |
His -14 | - | expression tag |
His -13 | - | expression tag |
His -12 | - | expression tag |
His -11 | - | expression tag |
His -10 | - | expression tag |
Ser -9 | - | expression tag |
Ser -8 | - | expression tag |
Glu -7 | - | expression tag |
Asn -6 | - | expression tag |
Leu -5 | - | expression tag |
Tyr -4 | - | expression tag |
Phe -3 | - | expression tag |
Gln -2 | - | expression tag |
Gly -1 | - | expression tag |
His 0 | - | expression tag |
Val 327 | Met 327 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 1 |
Total formula weight | 41757.5 | |
Non-Polymers* | Number of molecules | 2 |
Total formula weight | 531.5 | |
All* | Total formula weight | 42289.0 |