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3R5F

Crystal structure of D-alanine-D-alnine ligase from Xanthomonas oryzae pv. oryzae with ATP

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0008360biological_processregulation of cell shape
A0008716molecular_functionD-alanine-D-alanine ligase activity
A0009252biological_processpeptidoglycan biosynthetic process
A0016874molecular_functionligase activity
A0046872molecular_functionmetal ion binding
A0071555biological_processcell wall organization
Functional Information from PDB Data
site_idAC1
Number of Residues16
DetailsBINDING SITE FOR RESIDUE ATP A 368
ChainResidue
ALYS141
AGLU228
APHE304
AASN314
AGLU315
AMG369
AHOH476
AHOH479
APHE183
ALYS185
ASER191
ASER192
AGLU221
AALA222
AALA223
AVAL224

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 369
ChainResidue
AASP302
AASN314
AGLU315
AATP368
AHOH480

Functional Information from PROSITE/UniProt
site_idPS00843
Number of Residues12
DetailsDALA_DALA_LIGASE_1 D-alanine--D-alanine ligase signature 1. HGtlGEDGsLQG
ChainResidueDetails
AHIS107-GLY118

site_idPS00844
Number of Residues29
DetailsDALA_DALA_LIGASE_2 D-alanine--D-alanine ligase signature 2. LgcaGmARVDVFlcadgriv....InEVNTlPG
ChainResidueDetails
ALEU293-GLY321

227344

PDB entries from 2024-11-13

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