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3PX4

Crystal Structure of Bacillus DNA Polymerase I Large Fragment Bound to DNA and ddCTP-dA Mismatch (wobble) in Ajar Conformation

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, DDNA polymerase Ipolymer59267490.32UniProt (Q5KWC1)
Pfam (PF22619)
Pfam (PF00476)
In PDB
Geobacillus kaustophilus
2B, EDNA (5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DOC))-3')polymer92635.82
3C, FDNA (5'-D(*CP*AP*TP*AP*GP*GP*AP*GP*TP*CP*AP*GP*G)-3')polymer134040.62
4A, D2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATEnon-polymer451.22Chemie (DCT)
5DMAGNESIUM IONnon-polymer24.31Chemie (MG)
6DSULFATE IONnon-polymer96.12Chemie (SO4)
7waterwater18.01468Chemie (HOH)
Sequence modifications
A, D: 285 - 876 (UniProt: Q5KWC1)
PDBExternal DatabaseDetails
Ala 598Asp 600engineered mutation
Tyr 710Phe 712engineered mutation
His 823Arg 825SEE REMARK 999
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains6
Total formula weight148333.4
Non-Polymers*Number of molecules5
Total formula weight1118.7
All*Total formula weight149452.1
*Water molecules are not included.

223532

PDB entries from 2024-08-07

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