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3OJU

Snapshot of the large fragment of DNA polymerase I from Thermus Aquaticus processing c5 modified thymidies

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
DNA polymerase I, thermostablepolymer54060937.01UniProt (P19821)
Pfam (PF09281)
Pfam (PF00476)
Thermus aquaticusTaq polymerase 1
2B
(B)
DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DOC))-3')polymer123617.41
3C
(C)
DNA (5'-D(*AP*AP*AP*AP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3')polymer164948.21
4D
(A)
2'-deoxy-5-[(1-hydroxy-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)ethynyl]uridine 5'-(tetrahydrogen triphosphate)non-polymer631.41Chemie (SSJ)
5E, F
(A)
MAGNESIUM IONnon-polymer24.32Chemie (MG)
6G, H, I, L, R...
(A, C)
GLYCEROLnon-polymer92.16Chemie (GOL)
7J, K, M, N, O...
(A, C)
TRIETHYLENE GLYCOLnon-polymer150.211Chemie (PGE)
8X, Y, Z
(A, B, C)
waterwater18.0195Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains3
Total formula weight69502.6
Non-Polymers*Number of molecules20
Total formula weight2884.4
All*Total formula weight72387.0
*Water molecules are not included.

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PDB entries from 2025-12-24

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