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3OJU

Snapshot of the large fragment of DNA polymerase I from Thermus Aquaticus processing c5 modified thymidies

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
DNA polymerase I, thermostablepolymer54060937.01UniProt (P19821)Thermus aquaticusTaq polymerase 1
2B
(B)
DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DOC))-3')polymer123617.41
3C
(C)
DNA (5'-D(*AP*AP*AP*AP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3')polymer164948.21
4D
(A)
2'-deoxy-5-[(1-hydroxy-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)ethynyl]uridine 5'-(tetrahydrogen triphosphate)non-polymer631.41Chemie (SSJ)
5E, F
(A)
MAGNESIUM IONnon-polymer24.32Chemie (MG)
6G, H, I, L, R...
(A, C)
GLYCEROLnon-polymer92.16Chemie (GOL)
7J, K, M, N, O...
(A, C)
TRIETHYLENE GLYCOLnon-polymer150.211Chemie (PGE)
8X, Y, Z
(A, B, C)
waterwater18.0195Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains3
Total formula weight69502.6
Non-Polymers*Number of molecules20
Total formula weight2884.4
All*Total formula weight72387.0
*Water molecules are not included.

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PDB entries from 2026-02-04

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