Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3OJU

Snapshot of the large fragment of DNA polymerase I from Thermus Aquaticus processing c5 modified thymidies

Functional Information from GO Data
ChainGOidnamespacecontents
A0001882molecular_functionnucleoside binding
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
Functional Information from PDB Data
site_idAC1
Number of Residues24
DetailsBINDING SITE FOR RESIDUE SSJ A 1
ChainResidue
AMG2
ASER612
AGLN613
AILE614
AGLU615
AHIS639
AARG659
AARG660
ALYS663
ATHR664
APHE667
AMG3
AASP785
BDC111
BDOC112
CDA204
CDG205
AHOH33
AHOH70
AHOH126
AARG573
AARG587
AASP610
ATYR611

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 2
ChainResidue
ASSJ1
AASP610
ATYR611
AASP785

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 3
ChainResidue
ASSJ1
AHOH33
AASP610
AASP785

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 4
ChainResidue
AHOH163
ALYS354
AASP355
AASN565
AGLN566

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 5
ChainResidue
ATHR544
APRO579
AASN580
AASN583
CHOH22
CDC209
CDC210

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 6
ChainResidue
AGOL9
AHOH157
AASN485
BDG107
CDG211
CDT212

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PGE A 7
ChainResidue
AGLU347
AARG349
AGLY370
AASP371

site_idAC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PGE A 8
ChainResidue
AGLU745
AARG746

site_idAC9
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL A 9
ChainResidue
AGOL6
AASN485
ASER486
AARG487
AASP488
BHOH31
CDG211
CDT212
CDG213

site_idBC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PGE A 10
ChainResidue
AHOH42
AHOH131
AHOH131
ALYS767
ALYS767
AARG771
AVAL810

site_idBC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PGE A 11
ChainResidue
AASP371
AARG435

site_idBC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PGE A 12
ChainResidue
AARG313
AGLU315
ATRP318
ALEU552

site_idBC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PGE A 13
ChainResidue
AGLY396
AGLU397
AGLU404
AARG411

site_idBC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PGE A 14
ChainResidue
ASER460
ALYS542

site_idBC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 15
ChainResidue
AARG425
ATRP428
APHE724

site_idBC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PGE A 16
ChainResidue
ATHR447
AARG778

site_idBC8
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PGE A 17
ChainResidue
AGLY479

site_idBC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PGE A 18
ChainResidue
AHOH124
ALYS508
ATHR509
AGLU734
AALA735

site_idCC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL C 1
ChainResidue
CDC207
AARG728
AMET747
CPGE2
CDG206

site_idCC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PGE C 2
ChainResidue
CGOL1
CHOH31
CDG205
CDG206
CDC207

Functional Information from PROSITE/UniProt
site_idPS00447
Number of Residues20
DetailsDNA_POLYMERASE_A DNA polymerase family A signature. RraAKtinFGvlYgmSahrL
ChainResidueDetails
AARG659-LEU678

218500

PDB entries from 2024-04-17

PDB statisticsPDBj update infoContact PDBjnumon