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3LK9

DNA polymerase beta with a gapped DNA substrate and dTMP(CF2)P(CF2)P

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
DNA polymerase betapolymer33538241.71UniProt (P06746)
Pfam (PF14716)
Pfam (PF10391)
Pfam (PF14792)
Pfam (PF14791)
Homo sapiens (human)
2B
(T)
DNA (5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3')polymer164853.21
3C
(P)
DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3')polymer103061.01
4D
(D)
DNA (5'-D(P*GP*TP*CP*GP*G)-3')polymer51536.01
5E
(A)
5'-O-[(R)-{[(R)-[difluoro(phosphono)methyl](hydroxy)phosphoryl](difluoro)methyl}(hydroxy)phosphoryl]thymidinenon-polymer550.21Chemie (TFF)
6F, G
(A)
MAGNESIUM IONnon-polymer24.32Chemie (MG)
7H, I
(A)
SODIUM IONnon-polymer23.02Chemie (NA)
8J, K, L
(A)
CHLORIDE IONnon-polymer35.53Chemie (CL)
9M, N, O, P
(A, T, P, D)
waterwater18.0158Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight47691.9
Non-Polymers*Number of molecules8
Total formula weight751.1
All*Total formula weight48443.0
*Water molecules are not included.

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PDB entries from 2025-06-11

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