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3KS6

Crystal structure of Putative glycerophosphoryl diester phosphodiesterase (17743486) from AGROBACTERIUM TUMEFACIENS str. C58 (Dupont) at 1.80 A resolution

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B, C, D
(A, B, C, D)
Glycerophosphoryl diester phosphodiesterasepolymer25027278.74UniProt (A9CLR1)
Pfam (PF03009)
Agrobacterium tumefaciens str. C58
2E, K, O, R
(A, B, C, D)
UNKNOWN LIGANDnon-polymer4Chemie (UNL)
3F, L, P, S
(A, B, C, D)
MAGNESIUM IONnon-polymer24.34Chemie (MG)
4G
(A)
CHLORIDE IONnon-polymer35.51Chemie (CL)
5H, I, M, N, Q...
(A, B, C, D)
ACETATE IONnon-polymer59.06Chemie (ACT)
6J, U
(A, D)
DI(HYDROXYETHYL)ETHERnon-polymer106.12Chemie (PEG)
7V, W, X, Y
(A, B, C, D)
waterwater18.01322Chemie (HOH)
Sequence modifications
A, B, C, D: 1 - 249 (UniProt: A9CLR1)
PDBExternal DatabaseDetails
Gly 0-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight109114.8
Non-Polymers*Number of molecules17
Total formula weight699.2
All*Total formula weight109813.9
*Water molecules are not included.

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PDB entries from 2025-12-17

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